| Next changeset 1:8d3aff8ba8ad (2020-07-20) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqe commit 2da1480c5e2f439a6b30a253871a86bb05c39aa0" |
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added:
fastqe.xml test-data/out.html test-data/test.fq test-data/test2.fq |
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| diff -r 000000000000 -r ece21607a21d fastqe.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fastqe.xml Mon Jul 13 15:14:11 2020 -0400 |
| [ |
| @@ -0,0 +1,74 @@ +<tool id="fastqe" name="FASTQE" version="0.1.1"> + <description>visualize fastq files with emoji's 🧬😎</description> + <requirements> + <requirement type="package" version="0.1.1">fastqe</requirement> + </requirements> + <command detect_errors="exit_code"> + <![CDATA[ + + #for i in $input: + ln -s '$i' '$i.element_identifier' && + #end for + + echo "<html><head><title>FASTQE Report 🤔</title></head><body><h1>FASTQE Report 🤔</h1>" > '$output' && + + fastqe + --mean + $bin + --min + --max + #for i in $input: + '$i.element_identifier' + #end for + | sed 's/$/<br>/;s/^\([^\t]*\)\t\([^\t]*\)\t/<h2>\1: \2<\/h2>\n/' >> '$output' && + + echo "</body></html>" >> '$output' + ]]></command> + <inputs> + <param label="FastQ data" name="input" type="data" format="fastq" multiple="true"/> + <param label="Bin scores" name="bin" type="boolean" truevalue="--bin" falsevalue="" /> + </inputs> + <outputs> + <data format="html" name="output"/> + </outputs> + <tests> + <test> + <param name="input" value="test.fq,test2.fq" /> + <output name="output" file="out.html" /> + </test> + </tests> + <help><![CDATA[ +FASTQ + Emoji = FASTQE 🤔 +========================= + +Compute quality stats for FASTQ files and print those stats as emoji... for some reason. + +Scores can also be binned: + ++-------+-------+ +| Bin | Emoji | ++=======+=======+ +| N | 🚫 | ++-------+-------+ +| N | 🚫 | ++-------+-------+ +| 2-9 | 💀 | ++-------+-------+ +| 10–19 | 💩 | ++-------+-------+ +| 20–24 | ⚠️ | ++-------+-------+ +| 25–29 | 😄 | ++-------+-------+ +| 30–34 | 😆 | ++-------+-------+ +| 35–39 | 😎 | ++-------+-------+ +| ≥ 40 | 😍 | ++-------+-------+ + + +]]></help> + <citations> + </citations> +</tool> |
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| diff -r 000000000000 -r ece21607a21d test-data/out.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/out.html Mon Jul 13 15:14:11 2020 -0400 |
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| @@ -0,0 +1,14 @@ +<html><head><title>FASTQE Report 🤔</title></head><body><h1>FASTQE Report 🤔</h1> +<h2>test.fq: max</h2> +😜 😛 😛 😛 😛 😉 😉 😉 😉 😉 😉 😉 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😎 😄 😄 😎 😎 😎 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😁 😁 😁 😁 😁 😁 😁 😁 😄 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉<br> +<h2>test.fq: mean</h2> +😄 😋 😋 😋 😋 😜 😜 😜 😛 😜 😛 😜 😁 😉 😉 😉 😉 😉 😉 😉 😉 😉 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😉 😁 😁 😉 😁 😉 😉 😉 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😉 😁 😉 😁 😁 😁 😁 😁 😉 😁 😁 😁 😁 😉 😁 😁 😁 😁 😁 😁 😉 😉 😁 😁 😁 😁 😉 😉 😁 😉 😉 😉 😁 😉 😉 😉 😜 😉 😁 😉 😉 😁 😁 😁 😉 😁 😜 😜 😉 😉 😁 😉 😉 😉 😉 😁 😉 😁 😉 😉 😜 😜 😜 😉 😉 😜 😉 😜 😉 😉 😉 😛 😜 😉 😜 😉 😜 😉 😜 😜 😉 😜 😜 😉 😜 😛 😜 😉 😜 😜 😜 😜 😜 😜 😜 😛 😜 😛 😝 😛 😛 😜 😉 😜 😉 😜 😜 😛 😝 😜 😜 😜 😜 😛 😜 😛 😛 😛 😛 😛 ☺️ 😛 😝 😛 😝 😛 😛 😝 😝 😛 😝 ☺️ ☺️ ☺️ ☺️ 😛 ☺️ 😝 ☺️ 😋 😝 ☺️ 😋 😝 ☺️ 😋 😄 ☺️ ☺️ ☺️ 😝 ☺️ 😋 ☺️ ☺️ 😋 😄 😄 😋 😝 ☺️ 😋 😋 😋 ☺️ 😋 😋 😄 😄 😄 😋 😄 😄 😄 😆 😄 😋 😋 😋 😄 😄 😋 😋 😋 😆 😃 😘 😘 😘 😘 😘 😃 😃 😆 😆 😘 😃 ⚠️<br> +<h2>test.fq: min</h2> +💣 💣 💣 💣 💣 💣 💣 😆 💣 🔥 💣 😋 ☺️ 💩 😡 🔥 💣 💣 💣 💣 💣 💣 🔥 😡 ☺️ ⚠️ 💩 ⚠️ 💣 💩 ⚠️ ☺️ 🙀 🙀 ⚠️ 😾 💣 😋 💣 🙀 🙀 🙀 😡 😾 🙀 😆 😋 💣 😡 🔥 🔥 😋 💣 💣 💣 😡 🔥 🙀 💣 🔥 💣 🔥 ☺️ ⚠️ 😆 🙀 😾 💣 🙀 😋 ⚠️ 😾 😾 😾 😾 💣 😾 😆 💣 💣 😾 😾 😾 😾 😾 💣 💣 💣 😾 😾 🐵 💣 😾 😾 😾 😆 😝 💣 😄 🐵 🐵 😾 😾 💣 😡 😾 😾 🙀 😾 😾 🔥 😾 🐵 🐵 🐵 🐵 😊 😿 🐵 😡 🐵 😾 😾 💣 🐵 😾 😾 😾 🙀 😿 😙 😾 🐵 😾 🐵 🐵 🐵 🐵 😿 😾 🐵 🐵 💣 🐵 🐵 😿 😾 😿 😾 😾 🐵 🐵 🐵 😾 😿 😿 🙀 🙀 😿 🐵 🐵 🐵 🐵 🐵 🐵 🐵 😿 🐵 😿 😿 😿 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 😿 🐵 🐵 😿 🐵 🐵 🐵 🐵 🐵 😿 🐵 😿 🐵 🐵 🐵 🐵 🐵 😿 😿 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 😿 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 😿 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵 🐵<br> +<h2>test2.fq: max</h2> +😝 😝 😝 😝 😝 😉 😉 😉 😉 😉 😉 😉 😁 😁 😁 😁 😁 😁 😁 😁 😁 😁 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😁 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😄 😁 😄 😄 😄 😄 😁 😄 😁 😁 😄 😁 😁 😁 😁 😁 😁 😄 😁 😄 😄 😄 😄 😄 😄 😉 😁 😉 😁 😄 😉 😁 😄 😁 😉 😉 😁 😉 😄 😉 😉 😄 😁 😁 😉 😉 😄 😉 😄 😁 😉 😉 😁 😁 😁 😉 😉 😉 😁 😉 😉 😉 😉 😉 😁 😁 😁 😉 😁 😁 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😉 😛 😉 😉 😉 ☺️<br> +<h2>test2.fq: mean</h2> +😘 😆 ☺️ ☺️ 😋 😜 😜 😜 😋 😜 😜 😉 😁 😁 😁 😁 😁 😉 😉 😁 😁 😁 😄 😁 😁 😄 😄 😁 😄 😁 😁 😁 😄 😄 😄 😄 😁 😄 😉 😁 😄 😁 😁 😄 😄 😁 😁 😄 😉 😁 😁 😝 😝 😁 😁 ☺️ 😁 😉 😁 😁 😁 😁 😁 😝 😁 😁 😁 😁 😝 😁 😁 😉 😁 😁 😉 😁 😉 😃 😉 😁 😁 😁 😄 😁 😄 😄 😁 😄 😁 😝 😁 😄 😄 😁 😉 😁 😉 😁 😁 😁 😁 😄 😄 😁 😁 ☺️ 😉 😜 😁 😁 😁 😁 😁 😉 😁 😜 😁 😝 😁 😁 😁 😁 😁 😁 😁 😁 😁 😉 😄 😜 😁 😄 😁 😄 😁 😄 😁 😁 😜 😜 😜 😜 😉 😜 😉 😁 😉 😋 😜 😛 😉 😜 😜 😜 😉 😉 😉 😁 😁 😁 😁 😁 😋 😛 😜 😜 😁 😛 😄 😋 😛 😝 😉 😉 😄 ☺️ 😜 😜 😛 😆 😛 😉 😜 😜 😜 😜 😋 😝 😋 😜 😉 😉 😄 😉 😝 😝 😛 😋 😜 😜 😜 😄 😆 😜 😝 😉 😜 😋 😉 😜 😄 ☺️ ☺️ 😜 😘 😝 😆 😄 😜 😜 😜 😉 😛 😄 ☺️ 😙 😊 😄 😝 😆 😜 😉 😜 😄 😄 ☺️ ☺️ 😜 😉 😜 😉 😆 😆 😛 😙 😃 😙 😘 😝 😙 😡<br> +<h2>test2.fq: min</h2> +😡 😡 😋 😋 😆 😛 😛 😛 ⚠️ ☺️ 😛 😉 😁 😁 😁 😉 😜 ☺️ 😛 😁 😜 😁 😁 😜 😁 😄 😁 😜 😁 😁 😝 😜 😁 😁 😄 😄 😝 😁 😝 😁 😁 😉 😉 😁 😁 😉 😉 😁 😋 😁 😜 ⚠️ 😡 😉 😉 🔥 😉 😋 😉 😉 😁 😛 😜 ⚠️ 😉 😉 😉 😜 ⚠️ 😁 😉 ☺️ 😉 😉 😋 😜 😜 💣 ☺️ 😁 😜 😜 😁 😉 😁 😁 😜 😄 😜 😡 😉 😁 😄 😉 😄 😜 ☺️ 😜 😜 😉 😁 😁 😁 😜 😁 😡 😝 😋 😉 😉 😉 😛 😜 😆 😜 ☺️ 😜 😡 😁 😉 😜 😁 😜 😁 😉 😁 😉 😝 😁 😆 😁 😁 😜 😁 😉 😄 😁 😁 😝 😝 😄 😛 😛 😋 😝 😁 😛 😾 😋 😚 😝 😄 😋 😋 😉 😛 😝 😉 😉 😉 😉 😉 😾 😋 😋 😛 😉 😆 😿 💣 ☺️ 😗 😝 😛 🙀 😙 😝 😝 😋 😿 😝 😝 😄 😝 😛 😝 😿 😗 🙀 😝 😜 😜 😿 😉 😊 😊 ☺️ 🙀 😝 😋 ☺️ 😾 😾 😝 😗 😉 ☺️ 🙀 😉 ☺️ 😿 😙 😗 😛 🙀 😗 😾 🙀 😋 ☺️ 😛 😜 😆 😾 😊 😿 😿 😊 😄 😿 ☺️ 😉 ☺️ 😾 😾 😗 😗 😛 😉 ☺️ 😉 😿 😿 😋 😿 😿 😾 😊 😋 🐵 🐵<br> +</body></html> |
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| diff -r 000000000000 -r ece21607a21d test-data/test.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test.fq Mon Jul 13 15:14:11 2020 -0400 |
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| b'@@ -0,0 +1,344 @@\n+@M01368:8:000000000-A3GHV:1:1102:21788:11027/1\n+GCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGGGTGTGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTAAAGTGTGTTAATTCTG\n++\n+ABCCBCCBBFFFGGGGGGGGGGGHGHHHHHHGGHGGHHHHHHHHGHHHHHHHHHHHHHHHHHHGHHHHHFGGGGHHHHHHHHHHHHHHHHHHHHHHGHGHGGFCGGCGGGHHHGGGGGGGGGGGGGGGGGGGGGGGGGFFFFFFFFFFFFFFFFFFFFFDFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEF9EFFFFFFFFFFFBFF0FFBBBBFBFBFFFF0\n+@M01368:8:000000000-A3GHV:1:1102:5728:8777/1\n+ATATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAGATACTGCGACATAGGGTGCTCCGGCTCCAGCGTCTCGCAATGCTATCGCGTGCACACCCCCCAGACGAAAATACCAAATGCATGGAGAGCTCCCGTGAGTGGTTAATAGGGTGATAGACCTGTGATCCATCGTGATGTCTTATTTAAGGGGAACGTGTGGGCTATTTAGGTTTTATGACCCTGAAGTAGGAACCAGATG\n++\n+BBBBBFFFFFAFGG5GGGGGGGHHHGHHHHHHHHHHGGGGGHHHHHHGHHHHHHFGHHHGGGGGFHGHGGGHHHGGGCEGHHGG?F1BGGGGGHHHHHGGGGEGGHHHHGGGGGCGHGGGGCGHHHHHHHHHHHHHHHHGGHHHHGGCEEDFDEGGHHHHHHHCEHHFHHHHGHGFHHHFFGGGFFFGGFGBGFFFFFFFFGFDGGD9EFA.DAFA/;FEFF9FB?/BBF/FFFFBBFFFFF/FFEFFFBB\n+@M01368:8:000000000-A3GHV:1:1102:5983:21093/1\n+GTATCCGACATCTGGTTCCTACTTCAGGGTCATAAAACCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGGGTGTGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATCCTATTATTTATCGCACCTACG\n++\n+AAABCFCABBCFGGGGGGGGGGHHHHHHGFHHHHHHHHGGHHHGHGHHHGGGGFHHHHHHHHGHHHHHHHHHHHHHGGHGGHHHHHHFHGGHHHHFHGHHEHHHHHHHGHHHHHD@FGGHHHHHFFFHHGGHGH?DHHHHHGHGHEGG/@?ADGFGGFFFFAFFFFFFFFFFFFFFFFFFFFFFFAAFFFFFFDFFFFFFFF;D9BFFFFFFFFFFFFFFFFFEFFFBBFFF0BFFFBBFF0EFFFFFFFA\n+@M01368:8:000000000-A3GHV:1:1102:7765:18353/1\n+CTCCGGGCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGTCATAAAACCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGGGTGTGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTC\n++\n+CCDCCCCCCBCFGGGGGGGGGGGGGGGHHHHHHDHHHHHHHHHHHGGGGGHHGHGHHHGHHHHHHFHHHHGHHHHHHGHGHHHGHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHGGHGGHHHHHHHGFFHHHHHGHHHHHHHHHHHGHHHHHGCFGGHGHFHHGHGHGHHHHGGFHHHHGGGHGBFGCC=BFFFFFFFF-@DFFFFFFFFFFFFFFFFFFFFFFAFFAEF.::FBFBFFE-A9:BFFFF0\n+@M01368:8:000000000-A3GHV:1:1103:10405:17879/1\n+GTATCCGACATCTGGTTCCTACTTCAGGGTCATAAAACCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGGGTGTGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATCCTATTATTTATCGCACCTACG\n++\n+CBCCCFCCCCCFGGGGGGGGGGHHHHHHHHHHHHGHHHGHHHHHHHHHHHGGGGGGHHHHHHHHHHHHHHHHHHHHGGHGGHHHGHHGHHGHHHHHHHHHCGGFHHHHGHHHHHGCFGGHHGHHHHHHGFHHHGHHHHHHHGHGHGFF/CC?ADAFGFFFFFFFFFFFFFFDFFFFFFFFAFFFFFFFFFFFEDFFFFFFFFFFAFFFFFFFFFFFFFFFFFFFFFFBBFBFBFFFFFFFFFFFFFFFFF?\n+@M01368:8:000000000-A3GHV:1:1103:13493:8205/1\n+GTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGTCATAAAACCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGGGTGTGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATCCTATT\n++\n+CCCCCFFFFFFFGGGGGGGGGGGGGGGHFHHHHHHHHHHHHHHHHGHHHHHHHHGHHHIHHHHHHHGGGGFHHHHHHHHHHHHHHHHHHHGHGGHGGHHHHHHHHHGHHHHHHHHHHHHHHHHHGHHHH/FGGGGHHHHHHHGGEHHHHHGHHHHHHGHGHEFEFGGFFFFFFFFFFFFFFFFFFFFFAFDFFFFFAFFFF;;@FFEFFFFFFFFFFE=?AFFFFFFFFFFFFFFFFFFBFBBBFFFFEFF\n+@M01368:8:000000000-A3GHV:1:1103:14060:21273/1\n+GTATCCGACATCTGGTTCCTACTTCAGGGTCATAAAACCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGGGTGTGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATCCTATTACTGTCTCTTATACAC\n++\n+AAABAFCCCCCFGGGGGGGGGGHHHHHHHHHHHHHHHHGHHHHHHGHHHHGGGGGFHHHHHHHHHHHHHHHGHHHHGGHGGHHHHHHHHHHHHHHHHHH?GGHHHHHHGHHHHHFEGGGHHHHHHHHHHHHHHHGFHHHFHGHGHGFGCGG@@BCFGFFFFFFF?FFFFFFFFAFFFAD?@FFEEFFFFFFFFFFFFFFFFFFD9BFF/B/FFF/:/9FB9/BFA//;BFB:FFFBB/BFFFFFBFFFFB/\n+@M01368:8:000000000-A3GHV:1:1103:14528:12993/1\n+GCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATC'..b'GHFHHHHHFHEGDGHGDDEEHHBEDDEGFGHGBFFBFFEGGGEFGFGFB000;F0F;FGGEGGEFFF;-.9//B///B9FFFFF/BFFB/:.BB//;FBFFF\n+@M01368:8:000000000-A3GHV:1:1113:21679:18011/1\n+GATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGAGGGTGTGCACGCGATAGCATTGCGAGACGCTTGAGCCGGAGCACCCTATGTCGCAGTATATGTCTTTGATTCCTGCCTCTTCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTAACTGTCTCTTATACACATATCCACGCCCACGAGACTAAGGCGAAGTTCATT\n++\n+AA>1>11F1D1DDFFFFGGG1FH3GHGHGHGHFHEC?EC0B1FBGFB1GHHH21AF2HH2FEGEHAE10AAE/>/FFHE?/E/?E1@EFFH?E@/EGGG//B11B//<@@C0F/<0<FFDGGCC?FF221<BDD11@<11@DDCGEF1<111F1<F1FBGHGHCF-CHHFA./</0CGHF<0CC/;C-:-;;09;FFBFBBFFBC0FFFGGFC0009C00090/-:--9--;-;AFFE;/99-9--/;///\n+@M01368:8:000000000-A3GHV:1:1113:25528:14016/1\n+CCTACAAGCATTAATTAATTAACACACTTTAGTAAGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAGATACTGCGACATAGGGTGCTCCGGCTCCAGCGTCTCGCAATGCTATCGCGTGCACACCCCCCAGACGAAAATACCAAATGCATGGAGAGCTCCCGTGAGTGGTTAATAGGGTGATAGACCTGTGATCCATCGTGATGTCTTATTTAAGG\n++\n+>AAAAFFFBFFFGGGGGGGGGGHHFHGHHHHGHHHHHHHHHHHGGGGHHHHFHHHHFHGHHHHGAFFEFHEGHHHHHHHHGHEHHGGFGGGHHHHHHFHHHHHGGHHHHGGGGGHFHHFF?HHGGFECEFFGHFFGFHGECDGHGBGFHGDF@@?CGFHCEGGGFD.CCC?EGHBHHHFHHFBCFFGEB/CEGGGGDAA.90C9CEBFGGBBF/9.9FBFFFBBFF//99FFFFEABF//99FFEFFFBFF\n+@M01368:8:000000000-A3GHV:1:1113:5741:16959/1\n+TAGTAAGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAGATACTGCGACATAGGGTGCTCCGGCTCCAGCGTCTCGCAATGCTATCGCGTGCACACCCCCCAGACGAAAATACCAAATGCATGGAGAGCTCCCGTGAGTGGTTAATAGGGTGATAGACCTGTGATCCATCGTGATGTCTTATTTAAGGGGAACGTGTGGGCTATTTAGGTTTTATGA\n++\n+ABBBBFFFFFFFGGGFGGGGGGHHHGHHGGHBGHGAGFFCAFGHGFFGHHGFHHHHHGGGGGHGHHHHHHHHE3BFFHHHGG0EDF@GHFFGGGHGGGGGGGGGGGGGHHGGEEFHGFHHDDG@DGGGHHGDGGGGGHGG?CF?HHGHHHGHGHHHFFHGGGHHHHGGCD.;0<C;CGGGGEFF/.;0;FFFBF/0;0CFGFFB..9B/;0CBFFBBFFFFBAC?DED9;B9AD;.FFFB/B/;FBA/B//\n+@M01368:8:000000000-A3GHV:1:1114:14540:5315/1\n+CTTTAGTAAGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAGATACTGCGACATAGGGTGCTCCGGCTCCAGCGTCTCGCAATGCTATCGCGTGCACACCCCCCAGACGAAAATACCAAATGCATGGAGAGCTCCCGTGAGTGGTTAATAGGGTGATAGACCTGTGATCCATCGTGATGTCTTATTTAAGGGGAACGTGGGGGCTATTTAGGTTTTT\n++\n+AABCCFFFFFFFGGGGGGGGGGHHHHHHHFHHHHGHHGHHGGGHGGHHHHHHHGHHHHHHGGGGGHHFHHHFGHHGGFHHHHHGGGGGHHHGHGGHHHGGGGGGHGHGGGGHHGGGGHHHHHEGDDFGFFFHHGGGGGCDAFCFGFDHHHHGGHGHHHHHHBCGEHHHHGGHG.ACGEHGG0CBFFF:A;BB0;09CGF00CFFFE0AA?//CFFFFFFFFFFFFFFFBEF;A.-=A--:BBFB90;;FE.\n+@M01368:8:000000000-A3GHV:1:1114:15066:16302/1\n+TAAATAAGACATCACGATGGATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGGGTGTGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTAACGGTTGTTAATTAATTATTGCTTGTAGGACA\n++\n+BBBBAFFBDFBFBGGGGGFGGGBGFFFHGFHHGFFFHGHHHGHHHHFFHHHGHGC?AEFFHEFBFFFGHHHHH1FDGFFHGHGHFEGCGC-<<AHHHGGGGGGGFHH0GHFCCCADGGG?.9/A-???DGGFFF.9F9/EE-;;BBBFFBFFFFFFFFFEFFFFBFFBBFFFFF/BFFBFFFFF-DBFFF;/BFF//BB//9/BEA---9:BFFFFFF/F/.;.:@9.BBFF/;BFF/;/////9/////.\n+@M01368:8:000000000-A3GHV:1:1114:16639:15258/1\n+CCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGGGTGCGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATCCTATTATTTATCGCACCTACGTCCAATATTACAGGCGAACATACTTACTAAATTGTGT\n++\n+11>>ABFFFFFFGGCGC1BBF1GHHHBHHHHGFHGH1A100AA/GGEHGFBAA1FFD2FHHHHECG2F1BB/E0FC/A>EE/FGGFGEF1EGBBEHHCGGGHBGEHFHE0B?E--;C?CCGGG@A@GBFBBBB09?@??A-AB--ABE@=-=-9AE9A;FFFFFE=9-//;//;9FF/////;;///9B///;/B////9FFBB;--A@-;/9;9-:-/;;FFFE9BF?@;-9-99/B9F/://///99/;\n+@M01368:8:000000000-A3GHV:1:1114:2404:13066/1\n+TCCTACAAGCATTAATTAATTAACACACTTTAGTAAGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAGATACTGCGACATAGGGTGCTCCGGCTCCAGCGTCTCGCAATGCTATCGCGTGCACACCCCCCAGACGAAAATACCAAATGCATGGAGAGCTCCCGTGAGTGGTTAATAGGGTGATAGACCTGTGATCCATCTGTCTATTATACACATC\n++\n+CCCCCFFFFCFFGGGGGGGGGGHHHHHGHHHHHHHHHFFHHHHHGGGGHHHHHHHHFHHHHHHFGGHHGGHGGHHHHHHGHHFHHHHGGGGGGHHHHHHGHHHHHHHHHHGGGGGGGHH?FGHHHGGGGGGHHGGFGGHHGGGGHHHHHFGGGGFGHGHHGGGGGGGHGGGEGGHHGHHHHHHHHHGFBFFDA0FGGGFFGG0:EFGGGGGGGG;AEBF0B0BFFBFFFFFFFFFFFFFFFFFFFFFEFF0\n' |
| b |
| diff -r 000000000000 -r ece21607a21d test-data/test2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test2.fq Mon Jul 13 15:14:11 2020 -0400 |
| b |
| @@ -0,0 +1,16 @@ +@M01368:8:000000000-A3GHV:1:1101:6911:8255/1 +ATCTGGTTCCTACTTCAGGGCCATAAAACCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGGGTGTGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATCCTATTATTTATCGCACCTACGTTCAATATT ++ +BCCCCFFFFFFFGGGGGGGGGGGHHHHGHGHHHHHHHHHGGGGGGHHHHGHHHHHHHHHHGHHHHHHGGHGGHHHGHHHHFHHGHHHHHHHHHGHEHEFFGHHEGGCEFGGFHHHBGHHGHHHHGHFHHHGHGHGHGGCDFDDACGGGGGGGAAFFFFFFFFFBAFFFFFB;FFFFFFADDFFFFFFFFFFEFFFFFFFFFFBFFFFFFFFFFFFFFEFFFFFFFFBFEFFFFEFE;DFFFDFBFF/9BFB +@M01368:8:000000000-A3GHV:1:1101:14518:9998/1 +GTTATTATTATGTCCTACAAGCATTAATTAATTAACACACTTTAGTAAGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAGATACTGCGACATAGGGTGCTCCGGCTCCAGCGTCTCGCAATGCTATCGCGTGCACACCCCCCAGACGAAAATACCAAATGCATGGAGAGCTCCCGTGAGTGGTTAATAGGGGGATAGACCTGTGATCCATCGTGAT ++ +AAAAAFFFFFFFGGGGGGGGGGHGGHHHHGHHHHHHHGCGHHHHHHHHHHHHHHHGGGGGHHHHHHHHHGHHGFHFE5BGEEHFGGGHHHHHHHHFBHHGGGGFHGHHFGHHHHGHHHHHHGEGGGGFHFHGEGHHGGCDGDGHGGGDGGHGGCGGGHGHHH/ACDG?.1FGCDCCGCA.CC@CDCHFHGFFGGGEBFGAB//CEFBFGG.:;D;;A0AFFFFFB..:@ABFF//;BFFFFFBF/9D:A// +@M01368:8:000000000-A3GHV:1:1101:18422:19051/1 +GTATCCGACATCTGGTTCCTACTTCAGGGTCATAAAACCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGGGTGTGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATCCTATTATTTATCGCACCTACG ++ +CCCCCFDDDDDFGGGGGGGGGGHHHHHHHHHHHHHHHHGHHHHHHFHHHHGGGGHHHHHHHHHGHHHHHHHHHHHHGGHGGHHHHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHGCGGGHHHHHHHHHHHHHHHHHHHHHHGFDHGFHCFGGGGFGGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF;FFFFFFFFFFFFFFFFFFFFFFFFFFFFEFBFFFFFFFFFF:FFF. +@M01368:8:000000000-A3GHV:1:1101:25545:21098/1 +ATTAATTAACACACTTTAGTAAGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAATAGGATAAGGCAGGAATCAAAGACAGATACTGCGACATAGGGTGCTCCGGCTCCAGCGTCTCGCAATGCTATCGCGTGCACACCCCCCAGACGAAAATACCAAATGCATGGAGAGCTCCCGTGAGTGGTTAATAGGGTGATAGACCTGTGATCCATCGTGATGGCTTATTTAAGGGGAACGGGTGGGG ++ +33AA?DFD5BDFGGGFEBDGEGHEGHGEGHCEGGHHCHGHHFFHHGFGAGE53FF2FAFFGDE5FFFE5GFBFGAEE1GHHHGHHHEHE3FGHF@GEGEGGHHGG3FAGFFDE?EEE3GFEGFGFGGCG?GHHHFHGGGC@DHFFHD/A<C@EGFDCGGGHFHHHEGFGHBFHG0:CEHFCHGGED.;0CEF.F99B0CFFEEFGGG0FBFBBF0F/FFBDE?/9//9B.FFBFFFFFFBF..A..;@B-- |