| Previous changeset 4:a13b8ff61c6c (2016-08-04) Next changeset 6:4e47d0245887 (2016-08-05) |
|
Commit message:
planemo upload |
|
modified:
tool_dependencies.xml |
| b |
| diff -r a13b8ff61c6c -r ed0dbb61f0e1 tool_dependencies.xml --- a/tool_dependencies.xml Thu Aug 04 04:40:06 2016 -0400 +++ b/tool_dependencies.xml Thu Aug 04 05:53:40 2016 -0400 |
| b |
| @@ -1,9 +1,9 @@ <?xml version="1.0"?> <tool_dependency> - <package name="kggseq" version="1.0_20160412"> + <package name="kggseq" version="1.0_20160707"> <install version="1.0"> <actions> - <action type="download_by_url" target_filename="kggseq_archive-v1.0_20160412.tar.gz">https://github.com/crs4/kggseq_archive/archive/v1.0_20160412.tar.gz</action> + <action type="download_by_url" target_filename="kggseq_archive-v1.0_20160707.tar.gz">https://github.com/crs4/kggseq_archive/archive/v1.0_20160707.tar.gz</action> <action type="shell_command">java -jar kggseq.jar --no-lib-check --resource resources --buildver hg19 --db-filter 1kgeur201305,1kgeas201305,1kgafr201305,1kgsas201305,1kgamr201305,1kg201305,1kg201204,1kgafr201204,1kgeur201204,1kgamr201204,1kgasn201204,dbsnp135,dbsnp137,dbsnp138,dbsnp138nf,dbsnp141,ESP6500AA,ESP6500EA,exac --genome-annot --db-gene refgene,gencode,knowngene,ensembl --db-score dbnsfp --superdup-annot --cosmic-annot --omim-annot --scsnv-annot --mouse-pheno --zebrafish-pheno --ddd-annot --mendel-causing-predict all --patho-gene-predict --dgv-cnv-annot --o-flanking-seq 10 --vcf-file examples-lite/rare.disease.hg19.vcf</action> <action type="move_directory_files"> <source_directory>.</source_directory> |