| Previous changeset 11:3d748954434b (2022-06-22) Next changeset 13:7e8c677a7b71 (2024-09-14) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 656ce7ff596a8870b77848469e85b406c7bd9344 |
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modified:
macros.xml manipulate.xml test-data/addloomout1.loom test-data/addloomout2.loom test-data/addloomout3.loom test-data/converted.loom.test test-data/export.krumsiek11.X.tabular test-data/export.krumsiek11.loom test-data/export.krumsiek11.obs.tabular test-data/export.krumsiek11.obsm.tabular test-data/export.krumsiek11.var.tabular test-data/import.csv.h5ad test-data/import.loom.krumsiek11.h5ad test-data/import.mtx.legacy_10x.h5ad test-data/import.mtx.no_10x.h5ad test-data/import.mtx.v3_10x.h5ad test-data/import.tsv.h5ad test-data/import.umi_tools.h5ad test-data/inspect.X.tabular test-data/inspect.general.txt test-data/inspect.obs.tabular test-data/inspect.var.tabular test-data/krumsiek11.h5ad test-data/krumsiek11.loom test-data/manipulate.add_annotation_obs.h5ad test-data/manipulate.add_annotation_var.h5ad test-data/manipulate.concatenate.h5ad test-data/manipulate.filter_obs_key.h5ad test-data/manipulate.filter_var_index.h5ad test-data/manipulate.obs_names_make_unique.h5ad test-data/manipulate.rename_categories.h5ad test-data/manipulate.save_raw.h5ad test-data/manipulate.strings_to_categoricals.h5ad test-data/manipulate.transpose.h5ad test-data/manipulate.var_names_make_unique.h5ad test-data/obs_add_annotation.tabular test-data/pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad test-data/pp.pca.krumsiek11.h5ad test-data/tl.paga.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad test-data/tl.rank_genes_groups.krumsiek11.h5ad |
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| diff -r 3d748954434b -r ed4996a16f7f macros.xml --- a/macros.xml Wed Jun 22 07:21:03 2022 +0000 +++ b/macros.xml Sun Nov 12 16:42:25 2023 +0000 |
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| @@ -1,10 +1,10 @@ <macros> - <token name="@TOOL_VERSION@">0.7.5</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@TOOL_VERSION@">0.10.3</token> + <token name="@VERSION_SUFFIX@">0</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">anndata</requirement> - <requirement type="package" version="2.0.17">loompy</requirement> + <requirement type="package" version="3.0.6">loompy</requirement> <yield /> </requirements> </xml> |
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| diff -r 3d748954434b -r ed4996a16f7f manipulate.xml --- a/manipulate.xml Wed Jun 22 07:21:03 2022 +0000 +++ b/manipulate.xml Sun Nov 12 16:42:25 2023 +0000 |
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| @@ -20,11 +20,11 @@ <configfile name="script_file"><![CDATA[ @CMD_imports@ -adata = ad.read('$input') +adata = ad.read_h5ad('$input') #if $manipulate.function == 'concatenate' #for i, filepath in enumerate($manipulate.other_adatas) -adata_$i = ad.read('$filepath') +adata_$i = ad.read_h5ad('$filepath') #end for adata = adata.concatenate( #for i, filepath in enumerate($manipulate.other_adatas) @@ -174,7 +174,7 @@ <option value="var">Variables (var)</option> <option value="obs">Observations (obs)</option> </param> - <param name="new_annot" type="data" format="tabular" label="Table with new annotations" + <param name="new_annot" type="data" format="tabular" label="Table with new annotations" help="The new table should have the same number of rows and same order than obs or var. The key names should be in the header (1st line)"/> </when> <when value="filter"> @@ -289,12 +289,12 @@ <conditional name="manipulate"> <param name="function" value="rename_categories"/> <param name="key" value="cell_type"/> - <param name="categories" value="Er,Ml,Mt, Ne, pr"/> + <param name="categories" value="Ery, Mk, Mo, progenitor"/> </conditional> <assert_stdout> <has_text_matching expression="adata.rename_categories"/> <has_text_matching expression="key='cell_type'"/> - <has_text_matching expression="categories=\['Er', 'Ml', 'Mt', 'Ne', 'pr'\]"/> + <has_text_matching expression="categories=\['Ery', 'Mk', 'Mo', 'progenitor'\]"/> </assert_stdout> <output name="anndata" value="manipulate.rename_categories.h5ad" ftype="h5ad" compare="sim_size"/> </test> |
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| diff -r 3d748954434b -r ed4996a16f7f test-data/addloomout1.loom |
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| Binary file test-data/addloomout1.loom has changed |
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| diff -r 3d748954434b -r ed4996a16f7f test-data/addloomout2.loom |
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| Binary file test-data/addloomout2.loom has changed |
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| diff -r 3d748954434b -r ed4996a16f7f test-data/addloomout3.loom |
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| Binary file test-data/addloomout3.loom has changed |
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| diff -r 3d748954434b -r ed4996a16f7f test-data/converted.loom.test |
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| Binary file test-data/converted.loom.test has changed |
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| diff -r 3d748954434b -r ed4996a16f7f test-data/export.krumsiek11.X.tabular --- a/test-data/export.krumsiek11.X.tabular Wed Jun 22 07:21:03 2022 +0000 +++ b/test-data/export.krumsiek11.X.tabular Sun Nov 12 16:42:25 2023 +0000 |
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| b'@@ -498,143 +498,3 @@\n 0.1857\t0.0587\t-0.0003\t0.0087\t0.0084\t0.0221\t0.9613\t0.2272\t0.1058\t0.0298\t0.276\n 0.177\t0.0645\t0.0011\t0.009\t0.006\t0.0222\t0.9653\t0.2208\t0.1063\t0.0291\t0.2785\n 0.1664\t0.0673\t0.002\t0.0078\t0.0094\t0.0278\t0.9689\t0.2125\t0.1041\t0.0294\t0.2794\n-0.159\t0.0738\t0.0015\t0.0092\t0.0068\t0.0289\t0.97\t0.2054\t0.1042\t0.0299\t0.2807\n-0.1509\t0.0722\t0.002\t0.0078\t0.0038\t0.0353\t0.9718\t0.2007\t0.0995\t0.0284\t0.2862\n-0.1492\t0.0714\t0.0025\t0.014\t0.0066\t0.0381\t0.972\t0.1993\t0.0989\t0.0286\t0.2911\n-0.1445\t0.0706\t0.0049\t0.0148\t0.0107\t0.0411\t0.9767\t0.1999\t0.0957\t0.0306\t0.293\n-0.1402\t0.073\t0.0063\t0.0143\t0.0122\t0.0407\t0.9761\t0.2024\t0.0999\t0.0315\t0.2912\n-0.1389\t0.0725\t0.0069\t0.0163\t0.014\t0.0406\t0.9781\t0.206\t0.0972\t0.0301\t0.2917\n-0.1364\t0.0761\t0.0068\t0.013\t0.0147\t0.0441\t0.975\t0.2033\t0.0948\t0.0285\t0.2932\n-0.1363\t0.0786\t0.0082\t0.0151\t0.0153\t0.0463\t0.9812\t0.2048\t0.0921\t0.0291\t0.2963\n-0.1339\t0.0796\t0.0069\t0.0145\t0.0171\t0.0539\t0.984\t0.2069\t0.0884\t0.031\t0.2958\n-0.1305\t0.0847\t0.0085\t0.0156\t0.015\t0.0565\t0.9853\t0.2108\t0.0883\t0.0348\t0.2913\n-0.1276\t0.0846\t0.0087\t0.0156\t0.0124\t0.0569\t0.9906\t0.2103\t0.0888\t0.0282\t0.2906\n-0.1238\t0.0827\t0.008\t0.0176\t0.0158\t0.0603\t0.9893\t0.213\t0.0886\t0.0267\t0.2899\n-0.121\t0.077\t0.01\t0.0174\t0.0171\t0.0605\t0.9918\t0.2194\t0.0885\t0.029\t0.2966\n-0.1187\t0.0773\t0.0107\t0.0185\t0.0164\t0.0598\t0.9913\t0.2219\t0.0878\t0.0299\t0.2996\n-0.1158\t0.0758\t0.0095\t0.0171\t0.014\t0.0573\t0.9951\t0.2252\t0.0877\t0.0324\t0.3007\n-0.1131\t0.0785\t0.0121\t0.0212\t0.0153\t0.0587\t0.9946\t0.2275\t0.0886\t0.0303\t0.3019\n-0.1122\t0.0777\t0.0109\t0.0218\t0.0127\t0.0596\t0.9941\t0.2355\t0.0893\t0.0283\t0.3032\n-0.1072\t0.0748\t0.0119\t0.023\t0.0139\t0.0585\t0.9989\t0.241\t0.091\t0.0281\t0.3086\n-0.1028\t0.0746\t0.0094\t0.0226\t0.0179\t0.06\t1.0018\t0.2489\t0.0894\t0.028\t0.3093\n-0.099\t0.0747\t0.0085\t0.0216\t0.0202\t0.0572\t1.0025\t0.2566\t0.0881\t0.0277\t0.3119\n-0.0972\t0.072\t0.0094\t0.0201\t0.0221\t0.0575\t1.0\t0.2602\t0.0866\t0.0225\t0.3188\n-0.091\t0.0694\t0.0116\t0.0167\t0.0212\t0.059\t0.9977\t0.2646\t0.0859\t0.0206\t0.335\n-0.0881\t0.0635\t0.0127\t0.0144\t0.0243\t0.0575\t0.9993\t0.2765\t0.0842\t0.0192\t0.347\n-0.0777\t0.0648\t0.0107\t0.0142\t0.0227\t0.0554\t1.0009\t0.2916\t0.0783\t0.0182\t0.3636\n-0.0751\t0.0614\t0.0109\t0.014\t0.0234\t0.0511\t0.9961\t0.3049\t0.073\t0.0199\t0.3763\n-0.0672\t0.0573\t0.0062\t0.0126\t0.0243\t0.0472\t0.9971\t0.3239\t0.0715\t0.0206\t0.387\n-0.0605\t0.0557\t0.0099\t0.012\t0.0209\t0.0449\t0.999\t0.3487\t0.0693\t0.0166\t0.3983\n-0.0558\t0.0487\t0.007\t0.0078\t0.0213\t0.0421\t1.0022\t0.3729\t0.0685\t0.0143\t0.4193\n-0.0541\t0.0413\t0.0061\t0.0081\t0.0214\t0.0373\t1.0017\t0.398\t0.0627\t0.015\t0.4442\n-0.0473\t0.0383\t0.0069\t0.0082\t0.0187\t0.0349\t1.0021\t0.4264\t0.0628\t0.0124\t0.4633\n-0.0406\t0.0333\t0.0086\t0.0041\t0.0166\t0.0321\t1.0035\t0.456\t0.0572\t0.0091\t0.4903\n-0.0375\t0.0293\t0.0067\t0.0051\t0.0111\t0.0277\t1.0031\t0.4869\t0.0538\t0.0077\t0.5204\n-0.0345\t0.026\t0.0056\t0.0032\t0.0092\t0.0229\t1.0014\t0.5207\t0.0548\t0.0092\t0.5525\n-0.0355\t0.0241\t0.0018\t0.0041\t0.0093\t0.0204\t0.9994\t0.549\t0.052\t0.0077\t0.5806\n-0.0338\t0.0206\t0.0042\t0.001\t0.0103\t0.0208\t0.9973\t0.5815\t0.0465\t0.0034\t0.6118\n-0.0295\t0.0149\t0.0014\t0.0002\t0.0086\t0.0173\t0.9992\t0.612\t0.0456\t0.0037\t0.6484\n-0.0271\t0.0161\t-0.0009\t0.0042\t0.0087\t0.0183\t0.9966\t0.6404\t0.0462\t0.0017\t0.6776\n-0.0234\t0.0168\t-0.0031\t0.0043\t0.0105\t0.0146\t0.9972\t0.6661\t0.0422\t0.0024\t0.7058\n-0.0197\t0.0159\t-0.0013\t0.0039\t0.0117\t0.0134\t0.9977\t0.6918\t0.0429\t0.0049\t0.7283\n-0.019\t0.0129\t-0.0024\t0.0057\t0.0121\t0.0116\t0.998\t0.7171\t0.0406\t0.0068\t0.7472\n-0.0188\t0.0127\t-0.0019\t0.0055\t0.0136\t0.0106\t0.9989\t0.741\t0.041\t0.0035\t0.7613\n-0.0136\t0.0091\t-0.0\t0.0055\t0.011\t0.0114\t1.0007\t0.7634\t0.0377\t0.003\t0.7768\n-0.013\t0.0047\t0.0062\t0.0049\t0.0092\t0.0106\t1.004\t0.7838\t0.036\t0.0054\t0.7941\n-0.0121\t0.0046\t0.0084\t0.0015\t0.0085\t0.0119\t1.0038\t0.8002\t0.0354\t0.0076\t0.8068\n-0.0067\t0.003\t0.0063\t0.0018\t0.0057\t0.0093\t1.0053\t0.815\t0.0358\t0.0093\t0.8085\n-0.0036\t0.004\t0.0098\t0.0048\t0.0029\t0.0103\t1.0043\t0.8335\t0.0347\t0.0092\t0.8087\n-0.0022\t0.0014\t0.0081\t0.0054\t0.0016\t0.007\t1.0051\t0.845\t0.0368\t0.0106\t0.8054\n-0.0035\t0.0008\t0.0072\t0.0045\t-0.0017\t0.0118\t1.0106\t0.8645\t0.0355\t0.0123\t0.797\n-0.0019\t-0.0007\t0.0076\t0.0025\t-0.0015\t0.0157\t1.0082\t0.8786\t0.0353\t'..b'\t-0.0048\t-0.0074\t-0.0052\t-0.0027\t-0.0005\t0.9988\t1.0052\t0.016\t0.005\t0.9303\n-0.0031\t-0.0044\t-0.0053\t0.0004\t-0.002\t0.0006\t0.999\t1.0037\t0.017\t0.006\t0.9304\n-0.004\t-0.0049\t-0.0044\t0.002\t-0.0009\t-0.0012\t1.001\t1.0015\t0.0203\t0.0063\t0.9264\n-0.0024\t-0.0035\t-0.0028\t0.0016\t-0.0004\t-0.0013\t1.0027\t1.0006\t0.0214\t0.0027\t0.9278\n-0.0036\t-0.0006\t-0.0018\t0.0002\t-0.001\t0.0011\t1.0038\t1.0032\t0.0185\t0.0014\t0.9326\n-0.0036\t-0.0017\t-0.0026\t0.0049\t-0.0051\t0.0024\t1.0048\t1.0039\t0.0179\t-0.0011\t0.9367\n-0.0036\t-0.0032\t-0.0034\t0.0032\t-0.0023\t0.0036\t1.0062\t1.0058\t0.0195\t-0.0015\t0.9401\n-0.0018\t-0.0049\t1e-04\t0.001\t0.0\t0.0044\t1.0066\t1.0055\t0.0204\t-0.0021\t0.9432\n--0.0\t-0.0055\t-0.0014\t-0.0013\t-0.0025\t0.002\t1.0021\t1.0051\t0.0189\t-0.0044\t0.9453\n--0.0035\t-0.004\t-0.0032\t-0.0007\t-0.0018\t-0.0\t1.0024\t1.0047\t0.0187\t-0.0066\t0.9389\n--0.0071\t-0.0056\t-0.0025\t0.0002\t-0.002\t-0.004\t1.0032\t1.0047\t0.0155\t-0.0102\t0.9278\n--0.0053\t-0.0073\t-0.0031\t0.0033\t0.0006\t-0.0011\t1.0012\t1.0025\t0.0137\t-0.0045\t0.9215\n--0.001\t-0.0068\t-0.0031\t0.0045\t-0.0015\t-0.0032\t0.9998\t1.0044\t0.0113\t-0.0052\t0.9236\n--0.0017\t-0.0023\t-0.0046\t0.0052\t0.0033\t-0.0023\t0.9987\t1.0078\t0.0105\t-0.007\t0.9217\n--0.0025\t0.0006\t-1e-04\t0.0069\t0.0048\t-0.0008\t0.9951\t1.005\t0.0144\t-0.0072\t0.9174\n--0.0014\t0.0029\t-0.0026\t0.0083\t0.003\t0.0\t0.9967\t1.0052\t0.013\t-0.0051\t0.9144\n-1e-04\t0.0038\t-0.0015\t0.0065\t0.0026\t0.0015\t0.9945\t1.0036\t0.0144\t-0.003\t0.9207\n-0.0019\t0.002\t0.0014\t0.0059\t0.0048\t0.0008\t0.9966\t1.007\t0.0151\t-0.0008\t0.9236\n-0.0013\t0.0018\t-0.0016\t0.0077\t0.0045\t-0.0\t0.9966\t1.0074\t0.0135\t-0.0022\t0.9318\n-0.0014\t-0.0\t-0.0017\t0.006\t0.0053\t0.0002\t0.989\t1.0061\t0.014\t-0.0034\t0.9351\n-0.0012\t0.0023\t0.0008\t0.0046\t0.0053\t0.0032\t0.9867\t1.0054\t0.0131\t-0.0067\t0.938\n-0.0045\t0.0011\t0.0021\t0.0024\t0.007\t0.0006\t0.9872\t1.004\t0.0125\t-0.0076\t0.9325\n-0.0077\t0.0017\t0.0034\t0.0055\t0.0049\t-0.001\t0.9914\t1.0053\t0.0113\t-0.0099\t0.92\n-0.0061\t-0.0006\t0.0036\t0.0096\t0.0063\t-0.0023\t0.9914\t1.0067\t0.0126\t-0.0062\t0.9187\n-0.0046\t-0.0029\t0.0047\t0.0083\t0.0047\t-0.0058\t0.9915\t1.0034\t0.0144\t-0.0047\t0.9198\n-0.0025\t-0.002\t0.0026\t0.0064\t0.0047\t-0.0078\t0.9926\t1.003\t0.0153\t-0.0054\t0.9198\n--0.0023\t-0.0027\t0.0013\t0.0059\t0.0014\t-0.0077\t0.9938\t1.0012\t0.0143\t-0.0046\t0.9246\n-0.0004\t-0.0045\t0.0011\t0.0046\t0.0035\t-0.0082\t0.9927\t1.0007\t0.0133\t-0.0049\t0.9222\n--0.0006\t-0.0044\t0.001\t0.0071\t0.0049\t-0.0112\t0.9953\t1.0034\t0.0123\t-0.0061\t0.9246\n--0.0025\t-0.0051\t-0.0003\t0.0076\t0.003\t-0.0067\t0.9932\t1.0029\t0.014\t-0.0055\t0.9267\n--0.0038\t-0.0068\t0.0007\t0.0066\t-0.0003\t-0.0066\t0.9921\t1.0051\t0.013\t-0.0046\t0.9243\n--0.0023\t-0.0119\t0.0046\t0.0063\t0.0037\t-0.0059\t0.9913\t1.004\t0.0146\t-0.0022\t0.9326\n--0.0034\t-0.0117\t0.002\t0.0028\t0.003\t-0.0026\t0.9923\t1.0021\t0.0158\t-0.0021\t0.9364\n--0.0047\t-0.0134\t0.0031\t0.0018\t0.0046\t-0.0006\t0.9908\t0.9996\t0.0136\t-0.0015\t0.9376\n--0.0035\t-0.0163\t0.0017\t0.0016\t0.0035\t-0.0008\t0.9938\t0.9976\t0.013\t0.0009\t0.9446\n--0.002\t-0.0149\t-0.0009\t0.0021\t0.0013\t-0.0018\t0.9938\t0.9941\t0.015\t-0.0055\t0.9497\n--0.0036\t-0.0151\t0.0024\t-0.0013\t0.0012\t0.0004\t0.9976\t0.9917\t0.0123\t-0.0032\t0.9441\n--0.0032\t-0.0116\t0.001\t0.0008\t-0.0024\t0.0006\t1.001\t0.9934\t0.0108\t-0.0065\t0.9492\n--0.0023\t-0.0083\t0.0027\t0.0005\t0.0006\t-0.0014\t1.0014\t0.9927\t0.0136\t-0.0067\t0.94\n--0.001\t-0.006\t0.0022\t0.0034\t-0.0011\t-0.0018\t0.9997\t0.9933\t0.0132\t-0.0049\t0.9404\n--0.0024\t-0.0073\t-0.0011\t0.0036\t-0.0024\t-0.0008\t0.9975\t0.9958\t0.0165\t-0.0064\t0.9398\n-0.0007\t-0.0051\t0.0008\t0.0036\t-0.003\t-0.0012\t1.0006\t0.9932\t0.0161\t-0.0076\t0.9372\n--0.0008\t-0.0076\t0.0025\t0.0028\t-0.0048\t-0.0003\t1.0016\t0.992\t0.015\t-0.0095\t0.9325\n--0.0029\t-0.0045\t0.0027\t0.0051\t-0.0046\t-0.0039\t0.9989\t0.9913\t0.0177\t-0.0087\t0.9232\n-0.0002\t-0.002\t0.0061\t0.0048\t-0.0043\t-0.0016\t0.9989\t0.9911\t0.0152\t-0.0072\t0.916\n--0.001\t-0.002\t0.0015\t0.0029\t-0.0055\t-0.0004\t0.999\t0.9915\t0.0107\t-0.0076\t0.9119\n-0.0028\t-0.003\t0.0009\t0.0049\t-0.0073\t0.002\t1.0\t0.9946\t0.0127\t-0.0082\t0.9095\n-0.003\t-0.0035\t0.0008\t0.0052\t-0.0066\t1e-04\t1.0014\t0.9977\t0.0125\t-0.0046\t0.9069\n-0.0063\t-0.0023\t-0.0005\t0.0081\t-0.0046\t-0.0006\t0.9983\t0.997\t0.0109\t-0.003\t0.9118\n-0.0049\t0.0002\t-0.0013\t0.0054\t-0.0036\t0.0009\t1.0011\t0.9967\t0.0066\t-0.0033\t0.9177\n' 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| diff -r 3d748954434b -r ed4996a16f7f test-data/export.krumsiek11.obs.tabular --- a/test-data/export.krumsiek11.obs.tabular Wed Jun 22 07:21:03 2022 +0000 +++ b/test-data/export.krumsiek11.obs.tabular Sun Nov 12 16:42:25 2023 +0000 |
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| @@ -1,4 +1,4 @@ -index cell_type + cell_type 0 progenitor 1 progenitor 2 progenitor @@ -499,143 +499,3 @@ 17 progenitor 18 progenitor 19 progenitor -20 progenitor -21 progenitor -22 progenitor -23 progenitor -24 progenitor -25 progenitor -26 progenitor -27 progenitor -28 progenitor -29 progenitor -30 progenitor -31 progenitor -32 progenitor -33 progenitor -34 progenitor -35 progenitor -36 progenitor -37 progenitor -38 progenitor -39 progenitor -40 progenitor -41 progenitor -42 progenitor -43 progenitor -44 progenitor -45 progenitor -46 progenitor -47 progenitor -48 progenitor -49 progenitor -50 progenitor -51 progenitor -52 progenitor -53 progenitor -54 progenitor -55 progenitor -56 progenitor -57 progenitor -58 progenitor -59 progenitor -60 progenitor -61 progenitor -62 progenitor -63 progenitor -64 progenitor -65 progenitor -66 progenitor -67 progenitor -68 progenitor -69 progenitor -70 progenitor -71 progenitor -72 progenitor -73 progenitor -74 progenitor -75 progenitor -76 progenitor -77 progenitor -78 progenitor -79 progenitor -80 Neu -81 Neu -82 Neu -83 Neu -84 Neu -85 Neu -86 Neu -87 Neu -88 Neu -89 Neu -90 Neu -91 Neu -92 Neu -93 Neu -94 Neu -95 Neu -96 Neu -97 Neu -98 Neu -99 Neu -100 Neu -101 Neu -102 Neu -103 Neu -104 Neu -105 Neu -106 Neu -107 Neu -108 Neu -109 Neu -110 Neu -111 Neu -112 Neu -113 Neu -114 Neu -115 Neu -116 Neu -117 Neu -118 Neu -119 Neu -120 Neu -121 Neu -122 Neu -123 Neu -124 Neu -125 Neu -126 Neu -127 Neu -128 Neu -129 Neu -130 Neu -131 Neu -132 Neu -133 Neu -134 Neu -135 Neu -136 Neu -137 Neu -138 Neu -139 Neu -140 Neu -141 Neu -142 Neu -143 Neu -144 Neu -145 Neu -146 Neu -147 Neu -148 Neu -149 Neu -150 Neu -151 Neu -152 Neu -153 Neu -154 Neu -155 Neu -156 Neu -157 Neu -158 Neu -159 Neu |
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| diff -r 3d748954434b -r ed4996a16f7f test-data/export.krumsiek11.obsm.tabular --- a/test-data/export.krumsiek11.obsm.tabular Wed Jun 22 07:21:03 2022 +0000 +++ b/test-data/export.krumsiek11.obsm.tabular Sun Nov 12 16:42:25 2023 +0000 |
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| @@ -499,143 +499,3 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - |
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| diff -r 3d748954434b -r ed4996a16f7f test-data/export.krumsiek11.var.tabular --- a/test-data/export.krumsiek11.var.tabular Wed Jun 22 07:21:03 2022 +0000 +++ b/test-data/export.krumsiek11.var.tabular Sun Nov 12 16:42:25 2023 +0000 |
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| @@ -1,4 +1,4 @@ -index +"" Gata2 Gata1 Fog1 |
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| diff -r 3d748954434b -r ed4996a16f7f test-data/inspect.X.tabular --- a/test-data/inspect.X.tabular Wed Jun 22 07:21:03 2022 +0000 +++ b/test-data/inspect.X.tabular Sun Nov 12 16:42:25 2023 +0000 |
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| b'@@ -1,4 +1,4 @@\n-index\tGata2\tGata1\tFog1\tEKLF\tFli1\tSCL\tCebpa\tPu.1\tcJun\tEgrNab\tGfi1\n+\tGata2\tGata1\tFog1\tEKLF\tFli1\tSCL\tCebpa\tPu.1\tcJun\tEgrNab\tGfi1\n 0\t0.8032\t-0.0005\t-1e-04\t0.0003\t0.0013\t0.0011\t0.7997\t0.8017\t0.0006\t0.0009\t0.0002\n 1\t0.7239\t0.0016\t-0.0003\t-0.001\t0.0011\t0.0022\t0.8195\t0.7256\t0.0784\t0.0077\t0.0941\n 2\t0.6578\t0.0013\t-0.001\t-0.0027\t0.0025\t0.0011\t0.8358\t0.6624\t0.1105\t0.0239\t0.1497\n@@ -499,143 +499,3 @@\n 17\t0.1857\t0.0587\t-0.0003\t0.0087\t0.0084\t0.0221\t0.9613\t0.2272\t0.1058\t0.0298\t0.276\n 18\t0.177\t0.0645\t0.0011\t0.009\t0.006\t0.0222\t0.9653\t0.2208\t0.1063\t0.0291\t0.2785\n 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46\t0.0052\t0.0033\t-0.0023\t0.9987\t1.0078\t0.0105\t-0.007\t0.9217\n-124\t-0.0025\t0.0006\t-1e-04\t0.0069\t0.0048\t-0.0008\t0.9951\t1.005\t0.0144\t-0.0072\t0.9174\n-125\t-0.0014\t0.0029\t-0.0026\t0.0083\t0.003\t0.0\t0.9967\t1.0052\t0.013\t-0.0051\t0.9144\n-126\t1e-04\t0.0038\t-0.0015\t0.0065\t0.0026\t0.0015\t0.9945\t1.0036\t0.0144\t-0.003\t0.9207\n-127\t0.0019\t0.002\t0.0014\t0.0059\t0.0048\t0.0008\t0.9966\t1.007\t0.0151\t-0.0008\t0.9236\n-128\t0.0013\t0.0018\t-0.0016\t0.0077\t0.0045\t-0.0\t0.9966\t1.0074\t0.0135\t-0.0022\t0.9318\n-129\t0.0014\t-0.0\t-0.0017\t0.006\t0.0053\t0.0002\t0.989\t1.0061\t0.014\t-0.0034\t0.9351\n-130\t0.0012\t0.0023\t0.0008\t0.0046\t0.0053\t0.0032\t0.9867\t1.0054\t0.0131\t-0.0067\t0.938\n-131\t0.0045\t0.0011\t0.0021\t0.0024\t0.007\t0.0006\t0.9872\t1.004\t0.0125\t-0.0076\t0.9325\n-132\t0.0077\t0.0017\t0.0034\t0.0055\t0.0049\t-0.001\t0.9914\t1.0053\t0.0113\t-0.0099\t0.92\n-133\t0.0061\t-0.0006\t0.0036\t0.0096\t0.0063\t-0.0023\t0.9914\t1.0067\t0.0126\t-0.0062\t0.9187\n-134\t0.0046\t-0.0029\t0.0047\t0.0083\t0.0047\t-0.0058\t0.9915\t1.0034\t0.0144\t-0.0047\t0.9198\n-135\t0.0025\t-0.002\t0.0026\t0.0064\t0.0047\t-0.0078\t0.9926\t1.003\t0.0153\t-0.0054\t0.9198\n-136\t-0.0023\t-0.0027\t0.0013\t0.0059\t0.0014\t-0.0077\t0.9938\t1.0012\t0.0143\t-0.0046\t0.9246\n-137\t0.0004\t-0.0045\t0.0011\t0.0046\t0.0035\t-0.0082\t0.9927\t1.0007\t0.0133\t-0.0049\t0.9222\n-138\t-0.0006\t-0.0044\t0.001\t0.0071\t0.0049\t-0.0112\t0.9953\t1.0034\t0.0123\t-0.0061\t0.9246\n-139\t-0.0025\t-0.0051\t-0.0003\t0.0076\t0.003\t-0.0067\t0.9932\t1.0029\t0.014\t-0.0055\t0.9267\n-140\t-0.0038\t-0.0068\t0.0007\t0.0066\t-0.0003\t-0.0066\t0.9921\t1.0051\t0.013\t-0.0046\t0.9243\n-141\t-0.0023\t-0.0119\t0.0046\t0.0063\t0.0037\t-0.0059\t0.9913\t1.004\t0.0146\t-0.0022\t0.9326\n-142\t-0.0034\t-0.0117\t0.002\t0.0028\t0.003\t-0.0026\t0.9923\t1.0021\t0.0158\t-0.0021\t0.9364\n-143\t-0.0047\t-0.0134\t0.0031\t0.0018\t0.0046\t-0.0006\t0.9908\t0.9996\t0.0136\t-0.0015\t0.9376\n-144\t-0.0035\t-0.0163\t0.0017\t0.0016\t0.0035\t-0.0008\t0.9938\t0.9976\t0.013\t0.0009\t0.9446\n-145\t-0.002\t-0.0149\t-0.0009\t0.0021\t0.0013\t-0.0018\t0.9938\t0.9941\t0.015\t-0.0055\t0.9497\n-146\t-0.0036\t-0.0151\t0.0024\t-0.0013\t0.0012\t0.0004\t0.9976\t0.9917\t0.0123\t-0.0032\t0.9441\n-147\t-0.0032\t-0.0116\t0.001\t0.0008\t-0.0024\t0.0006\t1.001\t0.9934\t0.0108\t-0.0065\t0.9492\n-148\t-0.0023\t-0.0083\t0.0027\t0.0005\t0.0006\t-0.0014\t1.0014\t0.9927\t0.0136\t-0.0067\t0.94\n-149\t-0.001\t-0.006\t0.0022\t0.0034\t-0.0011\t-0.0018\t0.9997\t0.9933\t0.0132\t-0.0049\t0.9404\n-150\t-0.0024\t-0.0073\t-0.0011\t0.0036\t-0.0024\t-0.0008\t0.9975\t0.9958\t0.0165\t-0.0064\t0.9398\n-151\t0.0007\t-0.0051\t0.0008\t0.0036\t-0.003\t-0.0012\t1.0006\t0.9932\t0.0161\t-0.0076\t0.9372\n-152\t-0.0008\t-0.0076\t0.0025\t0.0028\t-0.0048\t-0.0003\t1.0016\t0.992\t0.015\t-0.0095\t0.9325\n-153\t-0.0029\t-0.0045\t0.0027\t0.0051\t-0.0046\t-0.0039\t0.9989\t0.9913\t0.0177\t-0.0087\t0.9232\n-154\t0.0002\t-0.002\t0.0061\t0.0048\t-0.0043\t-0.0016\t0.9989\t0.9911\t0.0152\t-0.0072\t0.916\n-155\t-0.001\t-0.002\t0.0015\t0.0029\t-0.0055\t-0.0004\t0.999\t0.9915\t0.0107\t-0.0076\t0.9119\n-156\t0.0028\t-0.003\t0.0009\t0.0049\t-0.0073\t0.002\t1.0\t0.9946\t0.0127\t-0.0082\t0.9095\n-157\t0.003\t-0.0035\t0.0008\t0.0052\t-0.0066\t1e-04\t1.0014\t0.9977\t0.0125\t-0.0046\t0.9069\n-158\t0.0063\t-0.0023\t-0.0005\t0.0081\t-0.0046\t-0.0006\t0.9983\t0.997\t0.0109\t-0.003\t0.9118\n-159\t0.0049\t0.0002\t-0.0013\t0.0054\t-0.0036\t0.0009\t1.0011\t0.9967\t0.0066\t-0.0033\t0.9177\n' 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| diff -r 3d748954434b -r ed4996a16f7f test-data/inspect.general.txt --- a/test-data/inspect.general.txt Wed Jun 22 07:21:03 2022 +0000 +++ b/test-data/inspect.general.txt Sun Nov 12 16:42:25 2023 +0000 |
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| @@ -1,3 +1,3 @@ -AnnData object with n_obs × n_vars = 640 × 11 +AnnData object with n_obs × n_vars = 500 × 11 obs: 'cell_type' - uns: 'cell_type_colors', 'highlights', 'iroot' + uns: 'highlights', 'iroot' |
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| diff -r 3d748954434b -r ed4996a16f7f test-data/inspect.obs.tabular --- a/test-data/inspect.obs.tabular Wed Jun 22 07:21:03 2022 +0000 +++ b/test-data/inspect.obs.tabular Sun Nov 12 16:42:25 2023 +0000 |
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| @@ -1,4 +1,4 @@ -index cell_type + cell_type 0 progenitor 1 progenitor 2 progenitor @@ -499,143 +499,3 @@ 17 progenitor 18 progenitor 19 progenitor -20 progenitor -21 progenitor -22 progenitor -23 progenitor -24 progenitor -25 progenitor -26 progenitor -27 progenitor -28 progenitor -29 progenitor -30 progenitor -31 progenitor -32 progenitor -33 progenitor -34 progenitor -35 progenitor -36 progenitor -37 progenitor -38 progenitor -39 progenitor -40 progenitor -41 progenitor -42 progenitor -43 progenitor -44 progenitor -45 progenitor -46 progenitor -47 progenitor -48 progenitor -49 progenitor -50 progenitor -51 progenitor -52 progenitor -53 progenitor -54 progenitor -55 progenitor -56 progenitor -57 progenitor -58 progenitor -59 progenitor -60 progenitor -61 progenitor -62 progenitor -63 progenitor -64 progenitor -65 progenitor -66 progenitor -67 progenitor -68 progenitor -69 progenitor -70 progenitor -71 progenitor -72 progenitor -73 progenitor -74 progenitor -75 progenitor -76 progenitor -77 progenitor -78 progenitor -79 progenitor -80 Neu -81 Neu -82 Neu -83 Neu -84 Neu -85 Neu -86 Neu -87 Neu -88 Neu -89 Neu -90 Neu -91 Neu -92 Neu -93 Neu -94 Neu -95 Neu -96 Neu -97 Neu -98 Neu -99 Neu -100 Neu -101 Neu -102 Neu -103 Neu -104 Neu -105 Neu -106 Neu -107 Neu -108 Neu -109 Neu -110 Neu -111 Neu -112 Neu -113 Neu -114 Neu -115 Neu -116 Neu -117 Neu -118 Neu -119 Neu -120 Neu -121 Neu -122 Neu -123 Neu -124 Neu -125 Neu -126 Neu -127 Neu -128 Neu -129 Neu -130 Neu -131 Neu -132 Neu -133 Neu -134 Neu -135 Neu -136 Neu -137 Neu -138 Neu -139 Neu -140 Neu -141 Neu -142 Neu -143 Neu -144 Neu -145 Neu -146 Neu -147 Neu -148 Neu -149 Neu -150 Neu -151 Neu -152 Neu -153 Neu -154 Neu -155 Neu -156 Neu -157 Neu -158 Neu -159 Neu |
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| diff -r 3d748954434b -r ed4996a16f7f test-data/inspect.var.tabular --- a/test-data/inspect.var.tabular Wed Jun 22 07:21:03 2022 +0000 +++ b/test-data/inspect.var.tabular Sun Nov 12 16:42:25 2023 +0000 |
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| @@ -1,4 +1,4 @@ -index +"" Gata2 Gata1 Fog1 |
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| @@ -499,143 +499,3 @@ 17 progenitor 18 progenitor 19 progenitor -20 progenitor -21 progenitor -22 progenitor -23 progenitor -24 progenitor -25 progenitor -26 progenitor -27 progenitor -28 progenitor -29 progenitor -30 progenitor -31 progenitor -32 progenitor -33 progenitor -34 progenitor -35 progenitor -36 progenitor -37 progenitor -38 progenitor -39 progenitor -40 progenitor -41 progenitor -42 progenitor -43 progenitor -44 progenitor -45 progenitor -46 progenitor -47 progenitor -48 progenitor -49 progenitor -50 progenitor -51 progenitor -52 progenitor -53 progenitor -54 progenitor -55 progenitor -56 progenitor -57 progenitor -58 progenitor -59 progenitor -60 progenitor -61 progenitor -62 progenitor -63 progenitor -64 progenitor -65 progenitor -66 progenitor -67 progenitor -68 progenitor -69 progenitor -70 progenitor -71 progenitor -72 progenitor -73 progenitor -74 progenitor -75 progenitor -76 progenitor -77 progenitor -78 progenitor -79 progenitor -80 Neu -81 Neu -82 Neu -83 Neu -84 Neu -85 Neu -86 Neu -87 Neu -88 Neu -89 Neu -90 Neu -91 Neu -92 Neu -93 Neu -94 Neu -95 Neu -96 Neu -97 Neu -98 Neu -99 Neu -100 Neu -101 Neu -102 Neu -103 Neu -104 Neu -105 Neu -106 Neu -107 Neu -108 Neu -109 Neu -110 Neu -111 Neu -112 Neu -113 Neu -114 Neu -115 Neu -116 Neu -117 Neu -118 Neu -119 Neu -120 Neu -121 Neu -122 Neu -123 Neu -124 Neu -125 Neu -126 Neu -127 Neu -128 Neu -129 Neu -130 Neu -131 Neu -132 Neu -133 Neu -134 Neu -135 Neu -136 Neu -137 Neu -138 Neu -139 Neu -140 Neu -141 Neu -142 Neu -143 Neu -144 Neu -145 Neu -146 Neu -147 Neu -148 Neu -149 Neu -150 Neu -151 Neu -152 Neu -153 Neu -154 Neu -155 Neu -156 Neu -157 Neu -158 Neu -159 Neu |
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