| Previous changeset 1:36093854bfc7 (2020-01-18) Next changeset 3:2b21643ce8d7 (2024-12-15) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tetyper commit a5b87b732eb5016450c39c07be4f5de95ff81fc7" |
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modified:
tetyper.xml |
| b |
| diff -r 36093854bfc7 -r edcf603bedfd tetyper.xml --- a/tetyper.xml Sat Jan 18 15:04:39 2020 -0500 +++ b/tetyper.xml Tue Nov 16 19:57:38 2021 +0000 |
| [ |
| @@ -8,6 +8,8 @@ </requirements> <command detect_errors="exit_code"> <![CDATA[ + ## avoid creating indices in the inputdir + ln -s '$reference' reference.fa && TETyper.py --threads \${GALAXY_SLOTS:-1} #if $collection_paired.selector == "paired" @@ -15,7 +17,7 @@ #elif $collection_paired.selector == "collection": --fq1 '${collection_paired.input_pair.forward}' --fq2 '${collection_paired.input_pair.reverse}' #end if - --ref '${reference}' + --ref 'reference.fa' --flank_len '${flank_length}' --min_reads '${min_reads}' --min_each_strand '${min_each_strand}' |