| Previous changeset 17:378fc3676c78 (2016-04-29) Next changeset 19:f1459638e1bc (2016-04-29) |
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modified:
CRAPomeQuery.xml |
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| diff -r 378fc3676c78 -r edde2724910f CRAPomeQuery.xml --- a/CRAPomeQuery.xml Fri Apr 29 15:42:22 2016 -0400 +++ b/CRAPomeQuery.xml Fri Apr 29 15:42:37 2016 -0400 |
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| @@ -1,6 +1,6 @@ <tool id="CRAPomeQuery" name="Query CRAPome"> <description></description> - <command interpreter="python">CRAPomeQuery.py $input $species $CrapomeFile \$INSTALL_RUN_PATH/</command> + <command interpreter="python">CRAPomeQuery.py $input $species $fasta_db $CrapomeFile \$INSTALL_RUN_PATH/</command> <requirements> <requirement type="set_environment">INSTALL_RUN_PATH</requirement> </requirements> @@ -10,6 +10,7 @@ <option value="HUMAN">Human</option> <option value="YEAST">Yeast</option> </param> + <param type="data" name="fasta_db" format="fasta" label="Provide Uniprot Fasta database" optional="true"/> </inputs> <outputs> <data format="txt" name="CrapomeFile" label="CRAPome File"/> @@ -46,5 +47,9 @@ **2) Species** Please specify species. Supported species are Human and Yeast. + +**3) Uniprot Fasta Database** + +A uniprot database can be provided that will be used to get gene names. </help> </tool> \ No newline at end of file |