| Previous changeset 0:5d0c54f7fea2 (2013-07-06) Next changeset 2:b482933a6de5 (2013-08-12) |
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Commit message:
updated to point to the IUC account for external dependencies |
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modified:
tool_dependencies.xml |
| b |
| diff -r 5d0c54f7fea2 -r ededc5ef3fc0 tool_dependencies.xml --- a/tool_dependencies.xml Sat Jul 06 10:30:00 2013 -0400 +++ b/tool_dependencies.xml Mon Aug 12 07:26:51 2013 -0400 |
| b |
| @@ -1,10 +1,10 @@ <?xml version="1.0"?> <tool_dependency> <package name="numpy" version="1.7.1"> - <repository name="package_numpy_1_7" owner="bgruening" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="c75482be1d3a" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> <package name="matplotlib" version="1.2.1"> - <repository name="package_matplotlib_1_2" owner="bgruening" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> <!-- TODO reportlab -> Python Imaging Library <package name="reportlab" version="1.2.1"> @@ -16,19 +16,21 @@ <actions> <action type="download_by_url">https://pypi.python.org/packages/source/b/biopython/biopython-1.61.tar.gz</action> <action type="set_environment_for_install"> - <repository name="package_matplotlib_1_2" owner="bgruening" toolshed="http://toolshed.g2.bx.psu.edu"> + <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> <package name="matplotlib" version="1.2.1" /> </repository> - <repository name="package_numpy_1_7" owner="bgruening" toolshed="http://toolshed.g2.bx.psu.edu"> + <repository changeset_revision="c75482be1d3a" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> <package name="numpy" version="1.7.1" /> </repository> </action> <action type="make_directory">$INSTALL_DIR/lib/python</action> - <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && - export PATH=$PATH:$PATH_NUMPY && - export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_MATPLOTLIB && - python setup.py install --home $INSTALL_DIR</action> + <action type="shell_command"> + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && + export PATH=$PATH:$PATH_NUMPY && + export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_MATPLOTLIB && + python setup.py install --install-lib $INSTALL_DIR/lib/python + </action> <action type="set_environment"> <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |