| Previous changeset 13:599ad3dce864 (2024-10-30) Next changeset 15:09c833d9b03b (2024-11-29) |
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Commit message:
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 05690508f6fc11cfc14213efedfd2bca5bb6040e |
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modified:
decoupler_pseudobulk.xml |
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| diff -r 599ad3dce864 -r ef054892d47f decoupler_pseudobulk.xml --- a/decoupler_pseudobulk.xml Wed Oct 30 14:01:25 2024 +0000 +++ b/decoupler_pseudobulk.xml Wed Oct 30 14:26:40 2024 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="decoupler_pseudobulk" name="Decoupler pseudo-bulk" version="1.4.0+galaxy7" profile="20.05"> +<tool id="decoupler_pseudobulk" name="Decoupler pseudo-bulk" version="1.4.0+galaxy8" profile="20.05"> <description>aggregates single cell RNA-seq data for running bulk RNA-seq methods</description> <requirements> <requirement type="package" version="1.4.0">decoupler</requirement> @@ -6,7 +6,7 @@ <command detect_errors="exit_code"><![CDATA[ mkdir deseq_output_dir && mkdir plots_output_dir && -python '$__tool_directory__/decoupler_pseudobulk.py' $input_file +python '$__tool_directory__/decoupler_pseudobulk.py' '$input_file' #if $adata_obs_fields_to_merge: --adata_obs_fields_to_merge '$adata_obs_fields_to_merge' #end if |