| Previous changeset 1:dc5de2ea607e (2024-07-12) Next changeset 3:da9ebef968bd (2024-09-12) |
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Commit message:
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/fragpipe commit e75f095a55caa325cd97127114c9703e4557ad50 |
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modified:
macros.xml |
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| diff -r dc5de2ea607e -r ef46866326ef macros.xml --- a/macros.xml Fri Jul 12 18:16:43 2024 +0000 +++ b/macros.xml Tue Jul 16 06:55:53 2024 +0000 |
| [ |
| @@ -1,7 +1,7 @@ <macros> <import>msfragger_macros.xml</import> <token name="@TOOL_VERSION@">20.0</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">fragpipe</requirement> @@ -20,11 +20,11 @@ name, experiment, bioreplicate, data type --> <xml name="samples"> - <param name="inputs" type="data" format="mzml,mzxml" multiple="true" label="Proteomics Spectrum files" help="All input scan files must of a matching format: mzML, mzXML"/> + <param name="inputs" type="data" format="mzml,mzxml,thermo.raw" multiple="true" label="Proteomics Spectrum files" help="All input scan files must be named with one of the following extensions: .mzML, .mzXML, or .raw"/> <param name="input_prefix" type="text" value="" optional="true" label="File name prefix" help="Names inputs: prefix_rep#.mzXML Leave blank to use History names of inputs"> <validator type="regex" message="">[a-zA-Z][a-zA-Z0-9_-]*</validator> </param> - <param name="manifest" type="data" format="tabular" label="Manifest file" help="TSV file with entries for each input scan file: Name (Name of input Galaxy history item. Extension in the name must be mzML or mzXML.), Experiment (empty, alphanumeric, or _), Bioreplicate (empty or integer), Data type (DDA, DIA, GPF-DIA, DIA-Quant, or DIA-lib)"/> + <param name="manifest" type="data" format="tabular" label="Manifest file" help="TSV file with entries for each input scan file: Name (Name of input Galaxy history item. Extension in the name must be .mzML, .mzXML, or .raw.), Experiment (empty, alphanumeric, or _), Bioreplicate (empty or integer), Data type (DDA, DIA, GPF-DIA, DIA-Quant, or DIA-lib)"/> </xml> <!-- |