| Previous changeset 40:d4801f72bb31 (2016-12-29) Next changeset 42:909ef1b054fc (2016-12-29) |
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Commit message:
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modified:
tool_dependencies.xml |
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| diff -r d4801f72bb31 -r ef7447af1404 tool_dependencies.xml --- a/tool_dependencies.xml Thu Dec 29 15:37:02 2016 -0500 +++ b/tool_dependencies.xml Thu Dec 29 16:08:31 2016 -0500 |
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| @@ -6,17 +6,19 @@ <!-- <action type="shell_command">cd /$GALAXY_ROOT_DIR/config/plugins/visualizations/</action> <action type="shell_command">hg clone https://insilico-bob@toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm</action> --> - <action type="shell_command">mkdir /$GALAXY_ROOT_DIR/test-data/MDAheatmap</action> + <action type="shell_command">cd $GALAXY_ROOT_DIR/test-data/</action> + <action type="shell_command">mkdir MDAheatmap</action> <action type="move_directory_files"> - <source>/export/shed_tools/toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm/*/ngchm/TestFiles</source> - <destination>/$GALAXY_ROOT_DIR/test-data/MDAheatmap</destination> + <source_directory>/export/shed_tools/toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm/*/ngchm/TestFiles</source_directory> + <destination_directory>$GALAXY_ROOT_DIR/test-data/MDAheatmap</destination_directory> </action> - <action type="shell_command">mkdir /$GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/</action> + <action type="shell_command">cd $GALAXY_ROOT_DIR/config/plugins/visualizations/</action> + <action type="shell_command">mkdir MDAheatmap</action> <action type="move_directory_files"> - <source>/export/shed_tools/toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm/*/ngchm/</source> - <destination>/$GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/</destination> + <source_directory>/export/shed_tools/toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm/*/ngchm/</source_directory> + <destination_directory>$GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/</destination_directory> </action> - <action type="shell_command">cd /$GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/templates</action> + <action type="shell_command">cd $GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/templates</action> <action type="shell_command">make</action> </actions> </install> |