| Previous changeset 1:f82981245fbe (2018-10-06) |
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Commit message:
planemo upload for repository https://github.com/xiaeryu/SpoTyping-v2.0/tree/master/SpoTyping-v2.0-commandLine commit 059ddaa55a5e4bdac5aaba74fe489e9268731390 |
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modified:
spotyping.xml |
| b |
| diff -r f82981245fbe -r efa2be6db310 spotyping.xml --- a/spotyping.xml Sat Oct 06 18:48:35 2018 -0400 +++ b/spotyping.xml Sun Oct 21 13:03:00 2018 -0400 |
| [ |
| @@ -1,4 +1,4 @@ -<tool id="spotyping" name="SpoTyping" version="@TOOL_VERSION@+galaxy1" profile="17.01"> +<tool id="spotyping" name="SpoTyping" version="@TOOL_VERSION@+galaxy2" profile="17.01"> <description>fast and accurate in silico Mycobacterium spoligotyping from sequence reads</description> <macros> @@ -9,7 +9,7 @@ <requirement type="package" version="@TOOL_VERSION@">spotyping</requirement> </requirements> - <command detect_errors="exit_code"><![CDATA[ + <command detect_errors="aggressive"><![CDATA[ #set $input_file='input.' + $input.extension ln -s '${input}' $input_file && SpoTyping.py @@ -60,6 +60,13 @@ </assert_contents> </output> </test> + <test expect_failure="true"> + <param name="input" value="input.fastq.gz" ftype="fastq.gz" /> + <param name="seq" value="--seq" /> + <assert_stderr> + <has_text text="BLAST options error" /> + </assert_stderr> + </test> <test expect_num_outputs="2"> <param name="input" value="input.fastq.gz" ftype="fastq.gz" /> <param name="noQuery" value="" /> |