| Previous changeset 2:b525b88bc941 (2020-10-21) |
|
Commit message:
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e" |
|
modified:
ctsm-fates.xml |
|
removed:
test-data/atm.log test-data/cesm.log test-data/cpl.log test-data/lnd.log test-data/restart_info.txt test-data/rof.log |
| b |
| diff -r b525b88bc941 -r efaa93ed5a79 ctsm-fates.xml --- a/ctsm-fates.xml Wed Oct 21 20:49:19 2020 +0000 +++ b/ctsm-fates.xml Thu Dec 17 14:33:35 2020 +0000 |
| [ |
| @@ -1,4 +1,4 @@ -<tool id="ctsm_fates" name="CTSM/FATES-EMERALD" version="2.0.1"> +<tool id="ctsm_fates" name="CTSM/FATES-EMERALD" version="2.0.1.1"> <description>Functionally Assembled Terrestrial Ecosystem Simulator</description> <requirements> <requirement type="package" version="2.0.1">fates-emerald</requirement> @@ -196,7 +196,7 @@ </inputs> <outputs> <collection name="history_files" type="list" label="${tool.name} on ${inputdata.name} (history file)"> - <discover_datasets pattern="__designation_and_ext__" directory="output_dir" visible="true" format="netcdf"/> + <discover_datasets pattern="__name__" directory="output_dir" visible="true" format="netcdf"/> </collection> <data name="atm_log" format="txt" label="${tool.name} on ${inputdata.name} (atm.log)"/> <data name="cesm_log" format="txt" label="${tool.name} on ${inputdata.name} (cesm.log)"/> @@ -217,38 +217,33 @@ <param name="run_startdate" value="2000-01-01" /> <param name="stop_option" value="nsteps" /> <param name="stopn" value="1" /> - <output name="atm_log" ftype="txt" file="atm.log" compare="sim_size" delta="1000"> + <output name="atm_log" ftype="txt"> <assert_contents> <has_text text="(datm_comp_final) atm: end of main integration loop" /> </assert_contents> </output> - <output name="cesm_log" ftype="txt" file="cesm.log" compare="sim_size" delta="1000"> + <output name="cesm_log" ftype="txt"> <assert_contents> <has_text text="pes participating in computation for CLM" /> </assert_contents> </output> - <output name="cpl_log" ftype="txt" file="cpl.log" compare="sim_size" delta="1000"> + <output name="cpl_log" ftype="txt"> <assert_contents> <has_text text="SUCCESSFUL TERMINATION" /> </assert_contents> </output> - <output name="lnd_log" ftype="txt" file="lnd.log" compare="sim_size" delta="1000"> + <output name="lnd_log" ftype="txt"> <assert_contents> <has_text text="Successfully" /> </assert_contents> </output> - <output name="rof_log" ftype="txt" file="rof.log" compare="sim_size" delta="1000"> + <output name="rof_log" ftype="txt"> <assert_contents> <has_text text="MOSART model initialization" /> </assert_contents> </output> - <output name="work" ftype="tar" file="workdir.tar" compare="sim_size" delta="1000"> - <assert_contents> - <has_size value="0"/> - </assert_contents> - </output> <output name="restart" ftype="tar" file="restart.tar" compare="sim_size" delta="100" /> - <output name="rinfo" ftype="txt" file="restart_info.txt" compare="sim_size" delta="1000"> + <output name="rinfo" ftype="txt"> <assert_contents> <has_text text="datm.r.2000-01-01-01800.nc" /> <has_text text="datm.rs1.2000-01-01-01800.bin" /> @@ -259,6 +254,55 @@ <output_collection name="history_files" count="0"> </output_collection> </test> + <test> + <param name="inputdata" value="inputdata_test.tar" /> + <param name="casename" value="one_month" /> + <param name="resolution" value="1x1_ALP1" /> + <param name="stop_option" value="nmonths" /> + <param name="stopn" value="1" /> + <output name="atm_log" ftype="txt"> + <assert_contents> + <has_text text="(datm_comp_final) atm: end of main integration loop" /> + </assert_contents> + </output> + <output name="cesm_log" ftype="txt"> + <assert_contents> + <has_text text="pes participating in computation for CLM" /> + </assert_contents> + </output> + <output name="cpl_log" ftype="txt"> + <assert_contents> + <has_text text="SUCCESSFUL TERMINATION" /> + </assert_contents> + </output> + <output name="lnd_log" ftype="txt"> + <assert_contents> + <has_text text="Successfully" /> + </assert_contents> + </output> + <output name="rof_log" ftype="txt"> + <assert_contents> + <has_text text="MOSART model initialization" /> + </assert_contents> + </output> + <output name="restart" ftype="tar"> + <assert_contents> + <has_size value="6348800" delta="5000"/> + </assert_contents> + </output> + + <output name="rinfo" ftype="txt"> + <assert_contents> + <has_text text="datm.r.2000-02-01-00000.nc" /> + <has_text text="datm.rs1.2000-02-01-00000.bin" /> + <has_text text="cpl.r.2000-02-01-00000.nc" /> + <has_text text="clm2.r.2000-02-01-00000.nc" /> + </assert_contents> + </output> + <output_collection name="history_files" count="1"> + </output_collection> + </test> + </tests> <help><![CDATA[ |
| b |
| diff -r b525b88bc941 -r efaa93ed5a79 test-data/atm.log --- a/test-data/atm.log Wed Oct 21 20:49:19 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,240 +0,0 @@\n-(datm_comp_init) decomp = 1d\n-(datm_comp_init) iradsw = 1\n-(datm_comp_init) factorFn = null\n-(datm_comp_init) restfilm = undefined\n-(datm_comp_init) restfils = undefined\n-(datm_comp_init) presaero = T\n-(datm_comp_init) force_prognostic_true = F\n-(datm_comp_init) wiso_datm = F\n-(datm_comp_init) inst_index = 1\n-(datm_comp_init) inst_name = ATM\n-(datm_comp_init) inst_suffix = \n-(shr_strdata_readnml) reading input namelist file: datm_in\n-(shr_stream_init) Reading file datm.streams.txt.CLM1PT.1x1_ALP1.Solar\n-(shr_file_freeUnit) unit 97 was not in use\n-(shr_stream_init) Reading file datm.streams.txt.CLM1PT.1x1_ALP1.Precip\n-(shr_file_freeUnit) unit 97 was not in use\n-(shr_stream_init) Reading file datm.streams.txt.CLM1PT.1x1_ALP1.TPQW\n-(shr_file_freeUnit) unit 97 was not in use\n-(shr_stream_init) Reading file datm.streams.txt.presaero.clim_2000\n-(shr_file_freeUnit) unit 97 was not in use\n-(shr_stream_init) Reading file datm.streams.txt.topo.observed\n-(shr_file_freeUnit) unit 97 was not in use\n-(datm_comp_init) datm datamode = CLMNCEP\n- (shr_strdata_init_streams) stream 1\n- (shr_strdata_init_streams) filePath = 1 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/\n- (shr_strdata_init_streams) fileName = 1 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc\n- (shr_strdata_init_streams) timeName = 1 time\n- (shr_strdata_init_streams) lonName = 1 xc\n- (shr_strdata_init_streams) latName = 1 yc\n- (shr_strdata_init_streams) hgtName = 1 unknownname\n- (shr_strdata_init_streams) maskName = 1 mask\n- (shr_strdata_init_streams) areaName = 1 area\n- (shr_strdata_init_streams) stream 2\n- (shr_strdata_init_streams) filePath = 2 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/\n- (shr_strdata_init_streams) fileName = 2 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc\n- (shr_strdata_init_streams) timeName = 2 time\n- (shr_strdata_init_streams) lonName = 2 xc\n- (shr_strdata_init_streams) latName = 2 yc\n- (shr_strdata_init_streams) hgtName = 2 unknownname\n- (shr_strdata_init_streams) maskName = 2 mask\n- (shr_strdata_init_streams) areaName = 2 area\n- (shr_strdata_init_streams) stream 3\n- (shr_strdata_init_streams) filePath = 3 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/\n- (shr_strdata_init_streams) fileName = 3 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc\n- (shr_strdata_init_streams) timeName = 3 time\n- (shr_strdata_init_streams) lonName = 3 xc\n- (shr_strdata_init_streams) latName = 3 yc\n- (shr_strdata_init_streams) hgtName = 3 unknownname\n- (shr_strdata_init_streams) maskName = 3 mask\n- (shr_strdata_init_streams) areaName = 3 area\n- (shr_strdata_init_streams) stream 4\n- (shr_strdata_init_streams) filePath = 4 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/cam/chem/trop_mozart_aero/aero/\n- (shr_strdata_init_streams) fileName = 4 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/cam/chem/trop_mozart_aero/aero/ALP1/aerosoldep_WACCM.ensmean_monthly_hist_1849-2015_0.9x1.25_CMIP6_c180926_ALP1.nc\n- (shr_strdata_init_streams) timeName = 4 time\n- (shr_strdata_init_streams) lonName = 4 lon\n- (shr_strdata_init_streams) latName = 4 lat\n- (shr_strdata_init_streams) hgtName = 4 unknownname\n- (shr_strdata_init_streams'..b'q__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc\n-(shr_dmodel_readstrm) file ub: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc 1\n-(shr_dmodel_readstrm) open : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/cam/chem/trop_mozart_aero/aero/ALP1/aerosoldep_WACCM.ensmean_monthly_hist_1849-2015_0.9x1.25_CMIP6_c180926_ALP1.nc\n-(shr_dmodel_readstrm) file lb: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/cam/chem/trop_mozart_aero/aero/ALP1/aerosoldep_WACCM.ensmean_monthly_hist_1849-2015_0.9x1.25_CMIP6_c180926_ALP1.nc 1824\n-(shr_dmodel_readstrm) file ub: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/cam/chem/trop_mozart_aero/aero/ALP1/aerosoldep_WACCM.ensmean_monthly_hist_1849-2015_0.9x1.25_CMIP6_c180926_ALP1.nc 1813\n-(shr_dmodel_readstrm) open : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/topo_forcing/ALP1/topodata_ALP1.nc\n-(shr_dmodel_readstrm) file lb: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/topo_forcing/ALP1/topodata_ALP1.nc 1\n-(shr_dmodel_readstrm) file ub: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/topo_forcing/ALP1/topodata_ALP1.nc 1\n- (datm_comp_run) max values = 266.23443603515625 0.0000000000000000 0.0000000000000000 \n-(datm_comp_run) atm: model date 20000101 0s\n-(datm_comp_init) datm_comp_init done\n-(datm_comp_run) writing test.datm.rs1.2000-01-01-01800.bin20000101 1800s\n-(shr_stream_restWrite) case name : test\n-(shr_stream_restWrite) case description : SDATM strdata\n-(shr_stream_restWrite) File created : 2020-10-20 14:24:33\n-(shr_stream_restWrite) Number of streams 5\n-(shr_stream_restWrite) * stream 1 first file name = clm1pt_ALP1_1901-01.nc\n-(shr_stream_restWrite) * stream 1 first have data = T\n-(shr_stream_restWrite) * stream 1 first nt = 248\n-(shr_stream_restWrite) * stream 1 first date secs = 19010101 0\n-(shr_stream_restWrite) * stream 1 last date secs = 19010131 75600\n-(shr_stream_restWrite) * stream 2 first file name = clm1pt_ALP1_1901-01.nc\n-(shr_stream_restWrite) * stream 2 first have data = T\n-(shr_stream_restWrite) * stream 2 first nt = 248\n-(shr_stream_restWrite) * stream 2 first date secs = 19010101 5400\n-(shr_stream_restWrite) * stream 2 last date secs = 19010131 81000\n-(shr_stream_restWrite) * stream 3 first file name = clm1pt_ALP1_1901-01.nc\n-(shr_stream_restWrite) * stream 3 first have data = T\n-(shr_stream_restWrite) * stream 3 first nt = 248\n-(shr_stream_restWrite) * stream 3 first date secs = 19010101 5400\n-(shr_stream_restWrite) * stream 3 last date secs = 19010131 81000\n-(shr_stream_restWrite) * stream 4 first file name = ALP1/aerosoldep_WACCM.ensmean_monthly_hist_1849-2015_0.9x1.25_CMIP6_c180926_ALP1.nc\n-(shr_stream_restWrite) * stream 4 first have data = T\n-(shr_stream_restWrite) * stream 4 first nt = 2004\n-(shr_stream_restWrite) * stream 4 first date secs = 18490116 43200\n-(shr_stream_restWrite) * stream 4 last date secs = 20151216 43200\n-(shr_stream_restWrite) * stream 5 first file name = ALP1/topodata_ALP1.nc\n-(shr_stream_restWrite) * stream 5 first have data = T\n-(shr_stream_restWrite) * stream 5 first nt = 1\n-(shr_stream_restWrite) * stream 5 first date secs = 10101 0\n-(shr_stream_restWrite) * stream 5 last date secs = 10101 0\n-(datm_comp_run) atm: model date 20000101 1800s\n-(datm_comp_final) -------------------------------------------------------------------------\n-(datm_comp_final) atm: end of main integration loop\n-(datm_comp_final) -------------------------------------------------------------------------\n' |
| b |
| diff -r b525b88bc941 -r efaa93ed5a79 test-data/cesm.log --- a/test-data/cesm.log Wed Oct 21 20:49:19 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,233 +0,0 @@\n-nohup: ignoring input\n- PIO rearranger options:\n- comm type =p2p \n- comm fcd =2denable \n- max pend req (comp2io) = 0\n- enable_hs (comp2io) = T\n- enable_isend (comp2io) = F\n- max pend req (io2comp) = 0\n- enable_hs (io2comp) = F\n- enable_isend (io2comp) = T\n-(seq_comm_setcomm) init ID ( 1 GLOBAL ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)\n-(seq_comm_setcomm) init ID ( 2 CPL ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)\n-(seq_comm_setcomm) init ID ( 5 ATM ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)\n-(seq_comm_joincomm) init ID ( 6 CPLATM ) join IDs = 2 5 ( npes = 1) ( nthreads = 1)\n-(seq_comm_jcommarr) init ID ( 3 ALLATMID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)\n-(seq_comm_joincomm) init ID ( 4 CPLALLATMID ) join IDs = 2 3 ( npes = 1) ( nthreads = 1)\n-(seq_comm_setcomm) init ID ( 9 LND ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)\n-(seq_comm_joincomm) init ID ( 10 CPLLND ) join IDs = 2 9 ( npes = 1) ( nthreads = 1)\n-(seq_comm_jcommarr) init ID ( 7 ALLLNDID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)\n-(seq_comm_joincomm) init ID ( 8 CPLALLLNDID ) join IDs = 2 7 ( npes = 1) ( nthreads = 1)\n-(seq_comm_setcomm) init ID ( 13 ICE ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)\n-(seq_comm_joincomm) init ID ( 14 CPLICE ) join IDs = 2 13 ( npes = 1) ( nthreads = 1)\n-(seq_comm_jcommarr) init ID ( 11 ALLICEID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)\n-(seq_comm_joincomm) init ID ( 12 CPLALLICEID ) join IDs = 2 11 ( npes = 1) ( nthreads = 1)\n-(seq_comm_setcomm) init ID ( 17 OCN ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)\n-(seq_comm_joincomm) init ID ( 18 CPLOCN ) join IDs = 2 17 ( npes = 1) ( nthreads = 1)\n-(seq_comm_jcommarr) init ID ( 15 ALLOCNID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)\n-(seq_comm_joincomm) init ID ( 16 CPLALLOCNID ) join IDs = 2 15 ( npes = 1) ( nthreads = 1)\n-(seq_comm_setcomm) init ID ( 21 ROF ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)\n-(seq_comm_joincomm) init ID ( 22 CPLROF ) join IDs = 2 21 ( npes = 1) ( nthreads = 1)\n-(seq_comm_jcommarr) init ID ( 19 ALLROFID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)\n-(seq_comm_joincomm) init ID ( 20 CPLALLROFID ) join IDs = 2 19 ( npes = 1) ( nthreads = 1)\n-(seq_comm_setcomm) init ID ( 25 GLC ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)\n-(seq_comm_joincomm) init ID ( 26 CPLGLC ) join IDs = 2 25 ( npes = 1) ( nthreads = 1)\n-(seq_comm_jcommarr) init ID ( 23 ALLGLCID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)\n-(seq_comm_joincomm) init ID ( 24 CPLALLGLCID ) join IDs = 2 23 ( npes = 1) ( nthreads = 1)\n-(seq_comm_setcomm) init ID ( 29 WAV ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)\n-(seq_comm_joincomm) init ID ( 30 CPLWAV ) join IDs = 2 29 ( npes = 1) ( nthreads = 1)\n-(seq_comm_jcommarr) init ID ( 27 ALLWAVID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)\n-(seq_comm_joincomm) init ID ( 28 CPLALLWAVID ) join IDs = 2 27 ( npes = 1) ( nthreads = 1)\n-('..b'\n- clmfates_interfaceMod.F90:: reading fates_mort_bmort\n- clmfates_interfaceMod.F90:: reading fates_mort_r_size_senescence\n- clmfates_interfaceMod.F90:: reading fates_mort_ip_size_senescence\n- clmfates_interfaceMod.F90:: reading fates_mort_r_age_senescence\n- clmfates_interfaceMod.F90:: reading fates_mort_ip_age_senescence\n- clmfates_interfaceMod.F90:: reading fates_mort_scalar_coldstress\n- clmfates_interfaceMod.F90:: reading fates_mort_scalar_cstarvation\n- clmfates_interfaceMod.F90:: reading fates_mort_scalar_hydrfailure\n- clmfates_interfaceMod.F90:: reading fates_mort_hf_sm_threshold\n- clmfates_interfaceMod.F90:: reading fates_mort_hf_flc_threshold\n- clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxha\n- clmfates_interfaceMod.F90:: reading fates_leaf_jmaxha\n- clmfates_interfaceMod.F90:: reading fates_leaf_tpuha\n- clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxhd\n- clmfates_interfaceMod.F90:: reading fates_leaf_jmaxhd\n- clmfates_interfaceMod.F90:: reading fates_leaf_tpuhd\n- clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxse\n- clmfates_interfaceMod.F90:: reading fates_leaf_jmaxse\n- clmfates_interfaceMod.F90:: reading fates_leaf_tpuse\n- clmfates_interfaceMod.F90:: reading fates_seed_germination_rate\n- clmfates_interfaceMod.F90:: reading fates_seed_decay_rate\n- clmfates_interfaceMod.F90:: reading fates_trim_limit\n- clmfates_interfaceMod.F90:: reading fates_trim_inc\n- clmfates_interfaceMod.F90:: reading fates_leaf_diameter\n- clmfates_interfaceMod.F90:: reading fates_z0mr\n- clmfates_interfaceMod.F90:: reading fates_displar\n- clmfates_interfaceMod.F90:: reading fates_phenflush_fraction\n- clmfates_interfaceMod.F90:: reading fates_phen_cold_size_threshold\n- clmfates_interfaceMod.F90:: reading fates_phen_stem_drop_fraction\n- clmfates_interfaceMod.F90:: reading fates_eca_decompmicc\n- clmfates_interfaceMod.F90:: reading fates_eca_km_nh4\n- clmfates_interfaceMod.F90:: reading fates_eca_vmax_nh4\n- clmfates_interfaceMod.F90:: reading fates_eca_km_no3\n- clmfates_interfaceMod.F90:: reading fates_eca_vmax_no3\n- clmfates_interfaceMod.F90:: reading fates_eca_km_p\n- clmfates_interfaceMod.F90:: reading fates_eca_vmax_p\n- clmfates_interfaceMod.F90:: reading fates_eca_km_ptase\n- clmfates_interfaceMod.F90:: reading fates_eca_vmax_ptase\n- clmfates_interfaceMod.F90:: reading fates_eca_alpha_ptase\n- clmfates_interfaceMod.F90:: reading fates_eca_lambda_ptase\n- clmfates_interfaceMod.F90:: reading fates_prescribed_nuptake\n- clmfates_interfaceMod.F90:: reading fates_prescribed_puptake\n- clmfates_interfaceMod.F90:: reading fates_rholvis\n- clmfates_interfaceMod.F90:: reading fates_rholnir\n- clmfates_interfaceMod.F90:: reading fates_rhosvis\n- clmfates_interfaceMod.F90:: reading fates_rhosnir\n- clmfates_interfaceMod.F90:: reading fates_taulvis\n- clmfates_interfaceMod.F90:: reading fates_taulnir\n- clmfates_interfaceMod.F90:: reading fates_tausvis\n- clmfates_interfaceMod.F90:: reading fates_tausnir\n- clmfates_interfaceMod.F90:: reading fates_hydr_avuln_node\n- clmfates_interfaceMod.F90:: reading fates_hydr_p50_node\n- clmfates_interfaceMod.F90:: reading fates_hydr_thetas_node\n- clmfates_interfaceMod.F90:: reading fates_hydr_epsil_node\n- clmfates_interfaceMod.F90:: reading fates_hydr_pitlp_node\n- clmfates_interfaceMod.F90:: reading fates_hydr_resid_node\n- clmfates_interfaceMod.F90:: reading fates_hydr_fcap_node\n- clmfates_interfaceMod.F90:: reading fates_hydr_pinot_node\n- clmfates_interfaceMod.F90:: reading fates_hydr_kmax_node\n- clmfates_interfaceMod.F90:: reading fates_leaf_vcmax25top\n- NetCDF: Variable not found\n- NetCDF: Invalid dimension ID or name\n- NetCDF: Invalid dimension ID or name\n- NetCDF: Invalid dimension ID or name\n- NetCDF: Invalid dimension ID or name\n- NetCDF: Invalid dimension ID or name\n- NetCDF: Invalid dimension ID or name\n- NetCDF: Invalid dimension ID or name\n- NetCDF: Invalid dimension ID or name\n- NetCDF: Invalid dimension ID or name\n- NetCDF: Invalid dimension ID or name\n- NetCDF: Variable not found\n- NetCDF: Variable not found\n' |
| b |
| diff -r b525b88bc941 -r efaa93ed5a79 test-data/cpl.log |
| b |
| Binary file test-data/cpl.log has changed |
| b |
| diff -r b525b88bc941 -r efaa93ed5a79 test-data/lnd.log --- a/test-data/lnd.log Wed Oct 21 20:49:19 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,2106 +0,0 @@\n-(lnd_init_mct) :CLM land model initialization\n- unknown\n-\n- Attempting to initialize the land model .....\n-\n- Attempting to initialize run control settings .....\n- Read in clm_inparm namelist from: lnd_in\n- \n- rooting_profile settings:\n- rooting_profile_method_water = 1\n- (rooting_profile_varindex_water = 1 )\n- rooting_profile_method_carbon = 1\n- (rooting_profile_varindex_carbon = 2 )\n- \n- soilwater_movement settings:\n- soilwater_movement_method = 1\n- upper_boundary_condition = 1\n- lower_boundary_condition = 2\n- use_bedrock = F\n- dtmin = 60.000000000000000 \n- verySmall = 1.0000000000000000E-008\n- xTolerUpper = 0.10000000000000001 \n- xTolerLower = 1.0000000000000000E-002\n- expensive = 42\n- inexpensive = 1\n- flux_calculation = 1\n- \n- soil_resis settings:\n- soil_resis_method = 1\n- Read in canopyfluxes_inparm namelist\n- (OPNFIL): Successfully opened file lnd_in on unit= 96\n- \n- canopyfluxes_inparm settings:\n-&CANOPYFLUXES_INPARM\n- USE_UNDERCANOPY_STABILITY=F,\n- ITMAX_CANOPY_FLUXES= 40,\n- /\n- \n- Read in clm_CanopyHydrology_inparm namelist\n- (OPNFIL): Successfully opened file lnd_in on unit= 96\n- \n- canopyhydrology settings:\n- interception_fraction = 1.0000000000000000 \n- maximum_leaf_wetted_fraction = 5.0000000000000003E-002\n- use_clm5_fpi = T\n- Read in surfacealbedo_inparm namelist\n- (OPNFIL): Successfully opened file lnd_in on unit= 96\n-\n- surfacealbedo_inparm settings\n-&SURFACEALBEDO_INPARM\n- SNOWVEG_AFFECTS_RADIATION=T,\n- /\n-\n- Read in clm_SnowHydrology_inparm namelist\n- (OPNFIL): Successfully opened file lnd_in on unit= 96\n- \n- SnowHydrology settings:\n-&CLM_SNOWHYDROLOGY_INPARM\n- WIND_DEPENDENT_SNOW_DENSITY=T,\n- SNOW_OVERBURDEN_COMPACTION_METHOD="Vionnet2012 ",\n- LOTMP_SNOWDENSITY_METHOD="Slater2017 ",\n- UPPLIM_DESTRUCT_METAMORPH= 175.00000000000000 ,\n- OVERBURDEN_COMPRESS_TFACTOR= 8.0000000000000002E-002,\n- MIN_WIND_SNOWCOMPACT= 5.0000000000000000 ,\n- RESET_SNOW=F,\n- RESET_SNOW_GLC=F,\n- RESET_SNOW_GLC_ELA= 1000000000.0000000 ,\n- SNOW_DZMIN_1= 1.0000000000000000E-002,\n- SNOW_DZMAX_L_1= 2.9999999999999999E-002,\n- SNOW_DZMAX_U_1= 2.0000000000000000E-002,\n- SNOW_DZMIN_2= 1.4999999999999999E-002,\n- SNOW_DZMAX_L_2= 7.0000000000000007E-002,\n- SNOW_DZMAX_U_2= 5.0000000000000003E-002,\n- /\n- \n- Read in clmu_inparm namelist\n- (OPNFIL): Successfully opened file lnd_in on unit= 96\n- urban air conditioning/heating and wasteheat = ON_WASTEHEAT \n- urban traffic flux = F\n- Read in clm_humanindex_inparm namelist\n- (OPNFIL): Successfully opened file lnd_in on unit= 96\n- Read in luna namelist\n- (OPNFIL): Successfully opened file lnd_in on unit= 96\n- \n- luna settings:\n-&LUNA\n- JMAXB1= 0.10000000000000001 ,\n- /\n- \n- Read in soilhydrology_inparm namelist\n- (OPNFIL): Successfully opened file lnd_in on unit= 96\n- \n- soilhydrology_inparm settings:\n-&SOILHYDROLOGY_INPARM\n- BASEFLOW_SCALAR= 1.0000000000000000E-003,\n- /\n- \n- Read in CENTURY_soilBGCDecompCascade namelist\n- (OPNFIL): Successfully opened file lnd_in on unit= 96\n- \n- CENTURY_soilBGCDecompCascade settings:\n-&CENTURY_SOILBGCDECOMPCASCADE\n- INITIAL_CSTOCKS= 3*200.00000000000000 ,\n- INITIAL_CSTOCKS_DEPTH= 1.5000000000000000 ,\n- /\n- \n- Successfully initialized run control settings\n-\n- Attempting to read maxsoil_patches and numcft from the surface data .....\n- (GETFIL): attempting to find local file surfdata_ALP1_simyr2000.nc\n- (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working'..b'OI_10CM 1 A \n- 396 TSOI_ICE 25 A \n- 397 TV 1 A \n- 398 TWS 1 A \n- 399 T_SCALAR 20 A \n- 400 U10 1 A \n- 401 U10_DUST 1 A \n- 402 URBAN_AC 1 A \n- 403 URBAN_HEAT 1 A \n- 404 VOLR 1 A \n- 405 VOLRMCH 1 A \n- 406 WA 1 A \n- 407 WASTEHEAT 1 A \n- 408 WBT 1 A \n- 409 WBT_R 1 A \n- 410 WBT_U 1 A \n- 411 WIND 1 A \n- 412 W_SCALAR 20 A \n- 413 ZBOT 1 A \n- 414 ZWT 1 A \n- 415 ZWT_PERCH 1 A \n- There will be a total of 1 history tapes\n-\n- History tape 1 write frequency is MONTHLY\n- All fields on history tape 1 are grid averaged\n- Number of time samples on history tape 1 is 120\n- Output precision on history tape 1 = 2\n-\n- hist_htapes_build hist tape = 1 written with dov2xy= T\n- hist_htapes_build Successfully initialized clm2 history files\n-------------------------------------------------------------\n- Successfully initialized the land model\n- begin initial run at: \n- nstep= 0 year= 2000 month= 1 day= 1 seconds= 0\n-\n-************************************************************\n-\n- dtime_sync= 1800 dtime_clm= 1800 mod = 0\n- clm: completed timestep 0\n- clm: calling FATES model 1\n-FATES Dynamics: 2000-01-01\n- clm: leaving fates model 1 1\n- clm: completed timestep 1\n- hist_htapes_wrapup : history tape 1 : no open file to close\n- writing restart file ./test.clm2.r.2000-01-01-01800.nc for model date = 2000-01-01-01800 \n-\n- restFile_open: writing restart dataset at ./test.clm2.r.2000-01-01-01800.nc at nstep = 1\n-\n- Opened file ./test.clm2.r.2000-01-01-01800.nc to write 458752\n- htape_create : Opening netcdf rhtape ./test.clm2.rh0.2000-01-01-01800.nc\n- Opened file ./test.clm2.rh0.2000-01-01-01800.nc to write 589824\n- htape_create : Successfully defined netcdf restart history file 1\n- Successfully wrote local restart file ./test.clm2.r.2000-01-01-01800.nc\n-------------------------------------------------------------\n-\n- (OPNFIL): Successfully opened file ./rpointer.lnd on unit= 95\n- Successfully wrote local restart pointer file\n- Successfully wrote out restart data at nstep = 1\n-------------------------------------------------------------\n' |
| b |
| diff -r b525b88bc941 -r efaa93ed5a79 test-data/restart_info.txt --- a/test-data/restart_info.txt Wed Oct 21 20:49:19 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,4 +0,0 @@ -test.datm.r.2000-01-01-01800.nc -test.datm.rs1.2000-01-01-01800.bin -test.cpl.r.2000-01-01-01800.nc -./test.clm2.r.2000-01-01-01800.nc |
| b |
| diff -r b525b88bc941 -r efaa93ed5a79 test-data/rof.log --- a/test-data/rof.log Wed Oct 21 20:49:19 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,14 +0,0 @@ -(rof_init_mct) :MOSART model initialization - mosart npes = 1 - mosart iam = 0 - inst_name = ROF - Read in mosart_inparm namelist from: mosart_in - define run: - run type = initial - coupling_period = 10800 - delt_mosart = 3600 - decomp option = roundrobin - bypass_routing option = direct_in_place - qgwl runoff option = threshold - smat option = Xonly - MOSART will not be active |