| Previous changeset 10:777ccdd1d6e4 (2015-10-11) Next changeset 12:05087b27692a (2016-11-27) |
|
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit a1517c9d22029095120643bbe2c8fa53754dd2b7 |
|
modified:
picard_SortSam.xml read_group_macros.xml tool_dependencies.xml |
| b |
| diff -r 777ccdd1d6e4 -r efc56ee1ade4 picard_SortSam.xml --- a/picard_SortSam.xml Sun Oct 11 10:46:17 2015 -0400 +++ b/picard_SortSam.xml Wed Nov 11 12:23:17 2015 -0500 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="picard_SortSam" name="SortSam" version="@TOOL_VERSION@.0"> +<tool id="picard_SortSam" name="SortSam" version="@TOOL_VERSION@.1"> <description>sort SAM/BAM dataset</description> <macros> <import>picard_macros.xml</import> @@ -21,7 +21,6 @@ <param name="sort_order" type="select" display="radio" label="Sort order" help="SORT_ORDER; default=coordinate"> <option value="coordinate" selected="True">Coordinate</option> <option value="queryname">Queryname</option> - <option value="unsorted">Unsorted</option> </param> <expand macro="VS" /> </inputs> @@ -56,7 +55,7 @@ @description@ SORT_ORDER=SortOrder - SO=SortOrder Sort order of output file Required. Possible values: {unsorted, queryname, coordinate} + SO=SortOrder Sort order of output file. You can either sort by queryname or by coordinate. @more_info@ |
| b |
| diff -r 777ccdd1d6e4 -r efc56ee1ade4 read_group_macros.xml --- a/read_group_macros.xml Sun Oct 11 10:46:17 2015 -0400 +++ b/read_group_macros.xml Wed Nov 11 12:23:17 2015 -0500 |
| b |
| @@ -121,7 +121,7 @@ #set $rg_pg = '' #end if - #if str($rg_param("PI")) + #if $rg_param("PI") != None #set $rg_pi = str($rg_param("PI")) #else #set $rg_pi = '' |
| b |
| diff -r 777ccdd1d6e4 -r efc56ee1ade4 tool_dependencies.xml --- a/tool_dependencies.xml Sun Oct 11 10:46:17 2015 -0400 +++ b/tool_dependencies.xml Wed Nov 11 12:23:17 2015 -0500 |
| b |
| @@ -4,6 +4,6 @@ <repository changeset_revision="3e9c24e5325b" name="package_picard_1_136" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="R" version="3.1.2"> - <repository changeset_revision="9f2fddb9d6e2" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="c987143177d4" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> |