| Previous changeset 0:96909b9d1df1 (2019-02-09) Next changeset 2:6fdb3542a406 (2019-07-22) |
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Commit message:
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/2d_feature_extraction/ commit e45ba62aae80d942bbf1cbf572bd9aec64297900 |
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modified:
2d_feature_extraction.py 2d_feature_extraction.xml |
| b |
| diff -r 96909b9d1df1 -r f03b4da203d0 2d_feature_extraction.py --- a/2d_feature_extraction.py Sat Feb 09 14:28:26 2019 -0500 +++ b/2d_feature_extraction.py Tue Jul 09 08:35:50 2019 -0400 |
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| @@ -118,7 +118,9 @@ if args.moments or args.all_features: df['moments'] = df['it'].map(lambda ait: regions[ait].moments) if args.convexity or args.all_features: - df['convexity'] = df.area/(df.perimeter*df.perimeter) + perimeter = df['it'].map(lambda ait: regions[ait].perimeter) + area = df['it'].map(lambda ait: regions[ait].area) + df['convexity'] = area/(perimeter*perimeter) del df['it'] df.to_csv(out_file, sep='\t', line_terminator='\n', index=False) |
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| diff -r 96909b9d1df1 -r f03b4da203d0 2d_feature_extraction.xml --- a/2d_feature_extraction.xml Sat Feb 09 14:28:26 2019 -0500 +++ b/2d_feature_extraction.xml Tue Jul 09 08:35:50 2019 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="ip_2d_feature_extraction" name="2D Feature Extraction" version="0.0.8"> +<tool id="ip_2d_feature_extraction" name="2D Feature Extraction" version="0.0.9"> <description>Feature Extraction</description> <requirements> <requirement type="package" version="0.23.4">pandas</requirement> |