| Previous changeset 3:e978c66bb55f (2016-08-31) Next changeset 5:86ac3b90e9f6 (2016-08-31) |
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Commit message:
Uploaded |
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modified:
lordec_graph.xml |
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| diff -r e978c66bb55f -r f0b144292846 lordec_graph.xml --- a/lordec_graph.xml Wed Aug 31 11:22:15 2016 -0400 +++ b/lordec_graph.xml Wed Aug 31 11:22:26 2016 -0400 |
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| @@ -1,9 +1,9 @@ -<tool id="lordecgraph" name="lordec_graph" version="0.5.3"> +<tool id="lordecgraph" name="lordec_graph" version="0.6"> <description>is an efficient tool to generate de Bruijn graph from PacBio corrected reads</description> <requirements> - <requirement type="package" version="0.5.3">lordec</requirement> + <requirement type="package" version="0.6">lordec</requirement> </requirements> - <command> + <command><![CDATA[ lordec-build-SR-graph -2 $short_reads -k $kmer_len @@ -11,8 +11,9 @@ -g $outgraph #if str( $advanced_options.advanced_options_selector) == "advanced" -T $advanced_options.threads -#end if -2>1 +#end if +2>&1 +]]> </command> <inputs> @@ -55,7 +56,7 @@ **Integrated by** -Yvan Le Bras and Cyril Monjeaud +Yvan Le Bras and Cyril Monjeaud GenOuest Bio-informatics Core Facility @@ -69,6 +70,7 @@ </help> <citations> + <citation type="doi">10.1186/s13742-015-0105-2</citation> <citation type="doi">10.1093/bioinformatics/btu538</citation> <citation type="bibtex">@INPROCEEDINGS{JOBIM2013, author = {Le Bras, Y. and ROULT, A. and Monjeaud, C. and Bahin, M. and Quenez, O. and Heriveau, C. and Bretaudeau, A. and Sallou, O. and Collin, O.}, @@ -78,5 +80,5 @@ url = {https://www.e-biogenouest.org/resources/128}, pages = {97-106} }</citation> -</citations> +</citations> </tool> |