| Previous changeset 2:382a4c19007f (2017-10-20) Next changeset 4:5ecdeca79a0d (2019-02-21) |
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Commit message:
planemo upload commit 99b8e51a68074a214ca4415a635a426e80e4129b |
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modified:
busco.xml tool-data/busco.loc.sample |
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| diff -r 382a4c19007f -r f18f0b887c31 busco.xml --- a/busco.xml Fri Oct 20 03:54:35 2017 -0400 +++ b/busco.xml Fri Dec 14 08:13:25 2018 -0500 |
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| @@ -9,16 +9,16 @@ && + if [ -z "\$AUGUSTUS_CONFIG_PATH" ] ; then BUSCO_PATH=\$(dirname \$(which run_BUSCO.py)) ; export AUGUSTUS_CONFIG_PATH=\$(realpath \${BUSCO_PATH}/../config) ; fi && + cp -r "\$AUGUSTUS_CONFIG_PATH/" augustus_dir/ && + export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ && + #if $adv.aug_prediction.augustus_mode == 'history': ## Using an augustus model from history, we need to unzip it and let augustus find it - cp -r "\$AUGUSTUS_CONFIG_PATH/" augustus_dir/ && - mkdir -p 'augustus_dir/species/' && tar -C 'augustus_dir/species/' -xzvf '${adv.aug_prediction.augustus_model}' > /dev/null && - - export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ && #end if run_BUSCO.py |
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| diff -r 382a4c19007f -r f18f0b887c31 tool-data/busco.loc.sample --- a/tool-data/busco.loc.sample Fri Oct 20 03:54:35 2017 -0400 +++ b/tool-data/busco.loc.sample Fri Dec 14 08:13:25 2018 -0500 |
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| @@ -5,9 +5,14 @@ # # Datasets can be retrieved from http://busco.ezlab.org/frame_wget.html # -# "/some/path/arthropoda/" would be the last column in the line -# If this were for the mm10 mouse genome, the resulting entry would look like: +# "/some/path/datasets/" would be the last column in the line +# If this were for the /some/path/lineage/cyanobacteria_odb9/ reference dataset: # -#arthropoda_2.0 arthropoda_2.0 /some/path/arthropoda/ +# $ ls /some/path/datasets/cyanobacteria_odb9/ +# ancestral ancestral_variants dataset.cfg hmms info lengths_cutoff prfl scores_cutoff +# +# the resulting entry would look like: +# +#cyanobacteria_odb9 cyanobacteria /some/path/datasets/ # # |