| Previous changeset 0:ca7c839a75ab (2021-12-03) Next changeset 2:bb2a8bd85c85 (2021-12-11) |
|
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/megan commit 374a2824a264468316f04281ed211079015503b5" |
|
modified:
daa_meganizer.xml macros.xml |
| b |
| diff -r ca7c839a75ab -r f1b6527ba952 daa_meganizer.xml --- a/daa_meganizer.xml Fri Dec 03 23:10:15 2021 +0000 +++ b/daa_meganizer.xml Tue Dec 07 10:17:41 2021 +0000 |
| b |
| @@ -47,7 +47,7 @@ && mv '$input_identifier' '$output' ]]></command> <inputs> - <param argument="--in" type="data" format="daa" label="Input DAA file"/> + <expand macro="input_daa_param"/> <section name="advanced_options" title="Advanced options" expanded="false"> <param argument="--metaDataFile" type="data" format="tabular" multiple="true" optional="true" label="Files containing metadata to be included in the output files"/> <expand macro="long_reads_param"/> @@ -58,9 +58,7 @@ <expand macro="read_assignment_mode_param"/> <expand macro="con_file_param"/> <expand macro="mapdb_param"/> - <param argument="--only" type="text" value="" label="Names of classifications to use" help="Leave blank to use all classifications"> - <expand macro="sanitize_query" validinitial="string.ascii_letters,string.punctuation"/> - </param> + <expand macro="only_named_classifications_param"/> </section> </inputs> <outputs> |
| b |
| diff -r ca7c839a75ab -r f1b6527ba952 macros.xml --- a/macros.xml Fri Dec 03 23:10:15 2021 +0000 +++ b/macros.xml Tue Dec 07 10:17:41 2021 +0000 |
| b |
| @@ -38,9 +38,28 @@ </when> </conditional> </macro> + <macro name="input_daa_param"> + <param argument="--in" type="data" format="daa" label="Input DAA file"/> + </macro> <macro name="long_reads_param"> <param argument="--longReads" type="boolean" truevalue="--longReads" falsevalue="" checked="false" label="Parse and analyse input reads as long reads?"/> </macro> + <macro name="max_matches_per_read_param"> + <param argument="--maxMatchesPerRead" type="integer" value="100" label="Maximum matches per read"/> + </macro> + <macro name="only_named_classifications_param"> + <param argument="--only" type="text" value="" label="Names of classifications to use" help="Leave blank to use all classifications"> + <sanitizer> + <valid initial="@VALIDINITIAL@"> + <remove value="'" /> + <add value="|" /> + </valid> + <mapping initial="none"> + <add source="'" target="'"'"'" /> + </mapping> + </sanitizer> + </param> + </macro> <macro name="classification_options"> <option value="EC" selected="true">EC</option> <option value="EGGNOG">EGGNOG</option> @@ -102,7 +121,7 @@ <mapping initial="none"> <add source="'" target="'"'"'" /> </mapping> - </sanitizer> + </sanitizer> </xml> <xml name="citations"> <citations> |