| Previous changeset 2:566f43df9ef4 (2017-10-20) Next changeset 4:9aabf0c3604a (2019-09-11) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 23fab16cd40acbd5b0e9d640ed3858040db7a622 |
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modified:
crossmap_bigwig.xml macros.xml |
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| diff -r 566f43df9ef4 -r f208825f64ec crossmap_bigwig.xml --- a/crossmap_bigwig.xml Fri Oct 20 11:33:27 2017 -0400 +++ b/crossmap_bigwig.xml Thu May 24 19:10:13 2018 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="crossmap_bw" name="CrossMap BigWig" version="@WRAPPER_VERSION@-0"> +<tool id="crossmap_bw" name="CrossMap BigWig" version="@WRAPPER_VERSION@"> <description>Convert genome coordinates or annotation files between genome assemblies</description> <macros> <import>macros.xml</import> @@ -11,9 +11,7 @@ CrossMap.py bigwig '${chain_source.input_chain}' '${input}' -'${output}' - -&& mv '${output}.bw' '${output}' +output ]]></command> <inputs> @@ -23,7 +21,7 @@ </inputs> <outputs> - <data name="output" format="bigwig" label="${tool.name} on ${on_string}" /> + <data name="output" format="bigwig" label="${tool.name} on ${on_string}" from_work_dir="output.bw" /> </outputs> <tests> @@ -54,7 +52,6 @@ wigToBigWig tool. We export files in bedGraph because it is usually much smaller than file in wiggle format, and more importantly, CrossMap internally transforms wiggle into bedGraph to increase running speed. - ]]></help> <citations> |
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| diff -r 566f43df9ef4 -r f208825f64ec macros.xml --- a/macros.xml Fri Oct 20 11:33:27 2017 -0400 +++ b/macros.xml Thu May 24 19:10:13 2018 -0400 |
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| @@ -2,11 +2,11 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="0.2.5">crossmap</requirement> + <requirement type="package" version="0.2.7">crossmap</requirement> <yield/> </requirements> </xml> - <token name="@WRAPPER_VERSION@">0.2.5</token> + <token name="@WRAPPER_VERSION@">0.2.7</token> <xml name="stdio"> <stdio> <regex match="Aborted (core dumped)" source="stdout" level="fatal"/> |