| Previous changeset 5:0766f46f379d (2017-08-05) Next changeset 7:f9720c5ea41a (2019-12-05) |
|
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a4b0969b33a68a0ea9ba12291f6694aec24f13ed |
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modified:
beta_diversity_through_plots_html_generation.py test-data/make_otu_heatmap/basic_heatmap.svg test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq |
| b |
| diff -r 0766f46f379d -r f2563a3173a3 beta_diversity_through_plots_html_generation.py --- a/beta_diversity_through_plots_html_generation.py Sat Aug 05 07:19:50 2017 -0400 +++ b/beta_diversity_through_plots_html_generation.py Tue Oct 30 19:22:23 2018 -0400 |
| [ |
| @@ -21,7 +21,7 @@ for directory in dir_list: regexp_result = re.search( - '([a-zA-Z\_]*)_emperor_pcoa_plot', + r'([a-zA-Z\_]*)_emperor_pcoa_plot', directory) metric = regexp_result.group(1) s += '\t\t\t\t<li>' + metric + ': ' |
| b |
| diff -r 0766f46f379d -r f2563a3173a3 test-data/make_otu_heatmap/basic_heatmap.svg --- a/test-data/make_otu_heatmap/basic_heatmap.svg Sat Aug 05 07:19:50 2017 -0400 +++ b/test-data/make_otu_heatmap/basic_heatmap.svg Tue Oct 30 19:22:23 2018 -0400 |
| b |
| b'@@ -5,183 +5,175 @@\n <svg height="360pt" version="1.1" viewBox="0 0 360 360" width="360pt" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">\n <defs>\n <style type="text/css">\n-*{stroke-linecap:butt;stroke-linejoin:round;}\n+*{stroke-linecap:butt;stroke-linejoin:round;stroke-miterlimit:100000;}\n </style>\n </defs>\n <g id="figure_1">\n <g id="patch_1">\n- <path d="\n-M0 360\n-L360 360\n-L360 0\n-L0 0\n+ <path d="M 0 360 \n+L 360 360 \n+L 360 0 \n+L 0 0 \n z\n " style="fill:#ffffff;"/>\n </g>\n <g id="axes_1">\n <g id="patch_2">\n- <path d="\n-M42.5819 326.418\n-L310.341 326.418\n-L310.341 15.21\n-L42.5819 15.21\n+ <path d="M 40.6975 325.6025 \n+L 309.498426 325.6025 \n+L 309.498426 15.21 \n+L 40.6975 15.21 \n z\n " style="fill:#ffffff;"/>\n </g>\n- <g clip-path="url(#pcf9eb7027b)">\n- <image height="311.76" id="image210c0d0649" width="268.2" x="42.581875" 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| b |
| diff -r 0766f46f379d -r f2563a3173a3 test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq --- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq Sat Aug 05 07:19:50 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq Tue Oct 30 19:22:23 2018 -0400 |
| b |
| @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0: NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG + -#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# \ No newline at end of file +#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# |
| b |
| diff -r 0766f46f379d -r f2563a3173a3 test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq --- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq Sat Aug 05 07:19:50 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq Tue Oct 30 19:22:23 2018 -0400 |
| b |
| @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0: ACGTGTACCCAAA + -@CCFFFDEHHHGF \ No newline at end of file +@CCFFFDEHHHGF |
| b |
| diff -r 0766f46f379d -r f2563a3173a3 test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq --- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq Sat Aug 05 07:19:50 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq Tue Oct 30 19:22:23 2018 -0400 |
| b |
| @@ -1,4 +1,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0: NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG + -#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# \ No newline at end of file +#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# |
| b |
| diff -r 0766f46f379d -r f2563a3173a3 test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq --- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq Sat Aug 05 07:19:50 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq Tue Oct 30 19:22:23 2018 -0400 |
| b |
| @@ -1,4 +1,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0: NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG + -#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# \ No newline at end of file +#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# |
| b |
| diff -r 0766f46f379d -r f2563a3173a3 test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq --- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq Sat Aug 05 07:19:50 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq Tue Oct 30 19:22:23 2018 -0400 |
| b |
| @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0: NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG + -#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# \ No newline at end of file +#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# |
| b |
| diff -r 0766f46f379d -r f2563a3173a3 test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq --- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq Sat Aug 05 07:19:50 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq Tue Oct 30 19:22:23 2018 -0400 |
| b |
| @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0: ACGTGTACCCAAA + -@CCFFFDEHHHGF \ No newline at end of file +@CCFFFDEHHHGF |
| b |
| diff -r 0766f46f379d -r f2563a3173a3 test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq --- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq Sat Aug 05 07:19:50 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq Tue Oct 30 19:22:23 2018 -0400 |
| b |
| @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0: NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG + -#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# \ No newline at end of file +#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# |
| b |
| diff -r 0766f46f379d -r f2563a3173a3 test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq --- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq Sat Aug 05 07:19:50 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq Tue Oct 30 19:22:23 2018 -0400 |
| b |
| @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0: ACGTGTACCCAAA + -@CCFFFDEHHHGF \ No newline at end of file +@CCFFFDEHHHGF |
