| Previous changeset 0:20ab85af9505 (2014-10-03) Next changeset 2:c12db4ec1619 (2014-10-24) |
|
Commit message:
Uploaded |
|
added:
test-data/Galaxy-Workflow-Estimate_minimum_informative_read_depth.ga |
| b |
| diff -r 20ab85af9505 -r f265e26ab550 test-data/Galaxy-Workflow-Estimate_minimum_informative_read_depth.ga --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Galaxy-Workflow-Estimate_minimum_informative_read_depth.ga Fri Oct 24 15:44:34 2014 -0400 |
| [ |
| b'@@ -0,0 +1,342 @@\n+{\n+ "a_galaxy_workflow": "true", \n+ "annotation": "", \n+ "format-version": "0.1", \n+ "name": "Estimate minimum informative read depth", \n+ "steps": {\n+ "0": {\n+ "annotation": "See sample in https://usegalaxy.org/u/guru%40psu.edu/h/error-rates-files", \n+ "id": 0, \n+ "input_connections": {}, \n+ "inputs": [\n+ {\n+ "description": "See sample in https://usegalaxy.org/u/guru%40psu.edu/h/error-rates-files", \n+ "name": "TR error rate"\n+ }\n+ ], \n+ "name": "Input dataset", \n+ "outputs": [], \n+ "position": {\n+ "left": 220, \n+ "top": 737\n+ }, \n+ "tool_errors": null, \n+ "tool_id": null, \n+ "tool_state": "{\\"name\\": \\"TR error rate\\"}", \n+ "tool_version": null, \n+ "type": "data_input", \n+ "user_outputs": []\n+ }, \n+ "1": {\n+ "annotation": "replace \'A\' with motif of interest", \n+ "id": 1, \n+ "input_connections": {\n+ "input": {\n+ "id": 0, \n+ "output_name": "output"\n+ }\n+ }, \n+ "inputs": [], \n+ "name": "Filter", \n+ "outputs": [\n+ {\n+ "name": "out_file1", \n+ "type": "input"\n+ }\n+ ], \n+ "position": {\n+ "left": 385, \n+ "top": 260\n+ }, \n+ "post_job_actions": {\n+ "HideDatasetActionout_file1": {\n+ "action_arguments": {}, \n+ "action_type": "HideDatasetAction", \n+ "output_name": "out_file1"\n+ }\n+ }, \n+ "tool_errors": null, \n+ "tool_id": "Filter1", \n+ "tool_state": "{\\"input\\": \\"null\\", \\"__rerun_remap_job_id__\\": null, \\"header_lines\\": \\"\\\\\\"0\\\\\\"\\", \\"cond\\": \\"\\\\\\"c4==\'A\'\\\\\\"\\", \\"__page__\\": 0}", \n+ "tool_version": "1.1.0", \n+ "type": "tool", \n+ "user_outputs": []\n+ }, \n+ "2": {\n+ "annotation": "", \n+ "id": 2, \n+ "input_connections": {\n+ "error_profile": {\n+ "id": 1, \n+ "output_name": "out_file1"\n+ }\n+ }, \n+ "inputs": [], \n+ "name": "Generate all possible combination of read profile", \n+ "outputs": [\n+ {\n+ "name": "output", \n+ "type": "tabular"\n+ }\n+ ], \n+ "position": {\n+ "left": 653.5, \n+ "top": 203\n+ }, \n+ "post_job_actions": {}, \n+ "tool_errors": null, \n+ "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/Profilegenerator/2.0.0", \n+ "tool_state": "{\\"error_profile\\": \\"null\\", \\"MOTIF\\": \\"\\\\\\"A\\\\\\"\\", \\"__page__\\": 0, \\"__rerun_remap_job_id__\\": null, \\"minprob\\": \\"\\\\\\"1e-08\\\\\\"\\", \\"Maxdepth\\": \\"\\\\\\"30\\\\\\"\\"}", \n+ "tool_version": "2.0.0", \n+ "type": "tool", \n+ "user_outputs": []\n+ }, \n+ "3": {\n+ "annotation": "", \n+ "id": 3, \n+ "input_connections": {\n+ "input": {\n+ "id": 2, \n+ "output_name": "output"\n+ }\n+ }, \n+ "inputs": [], \n+ "name": "Unique", \n+ "outputs": [\n+ {\n+ "name": "outfile", \n+ "type": "input"\n+ }\n+ ], \n+ "position": {\n+ "left": 676, \n+ "top": 322\n+ }, \n+ "post_job_actions": {\n+ '..b' "microsat_error_profile": {\n+ "id": 0, \n+ "output_name": "output"\n+ }, \n+ "microsat_raw": {\n+ "id": 6, \n+ "output_name": "out_file1"\n+ }\n+ }, \n+ "inputs": [], \n+ "name": "Evaluate the probability of the allele combination to generate read profile", \n+ "outputs": [\n+ {\n+ "name": "microsat_corrected", \n+ "type": "tabular"\n+ }\n+ ], \n+ "position": {\n+ "left": 708.5, \n+ "top": 913\n+ }, \n+ "post_job_actions": {\n+ "HideDatasetActionmicrosat_corrected": {\n+ "action_arguments": {}, \n+ "action_type": "HideDatasetAction", \n+ "output_name": "microsat_corrected"\n+ }\n+ }, \n+ "tool_errors": null, \n+ "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/heteroprob/2.0.0", \n+ "tool_state": "{\\"microsat_raw\\": \\"null\\", \\"__page__\\": 0, \\"__rerun_remap_job_id__\\": null, \\"microsat_error_profile\\": \\"null\\", \\"expectedminorallele\\": \\"\\\\\\"0.5\\\\\\"\\"}", \n+ "tool_version": "2.0.0", \n+ "type": "tool", \n+ "user_outputs": []\n+ }, \n+ "8": {\n+ "annotation": "", \n+ "id": 8, \n+ "input_connections": {\n+ "input": {\n+ "id": 7, \n+ "output_name": "microsat_corrected"\n+ }\n+ }, \n+ "inputs": [], \n+ "name": "Sort", \n+ "outputs": [\n+ {\n+ "name": "out_file1", \n+ "type": "input"\n+ }\n+ ], \n+ "position": {\n+ "left": 761, \n+ "top": 1133\n+ }, \n+ "post_job_actions": {\n+ "HideDatasetActionout_file1": {\n+ "action_arguments": {}, \n+ "action_type": "HideDatasetAction", \n+ "output_name": "out_file1"\n+ }\n+ }, \n+ "tool_errors": null, \n+ "tool_id": "sort1", \n+ "tool_state": "{\\"__page__\\": 0, \\"style\\": \\"\\\\\\"num\\\\\\"\\", \\"column\\": \\"{\\\\\\"__class__\\\\\\": \\\\\\"UnvalidatedValue\\\\\\", \\\\\\"value\\\\\\": \\\\\\"12\\\\\\"}\\", \\"__rerun_remap_job_id__\\": null, \\"order\\": \\"\\\\\\"ASC\\\\\\"\\", \\"input\\": \\"null\\", \\"column_set\\": \\"[{\\\\\\"other_order\\\\\\": \\\\\\"ASC\\\\\\", \\\\\\"__index__\\\\\\": 0, \\\\\\"other_column\\\\\\": {\\\\\\"__class__\\\\\\": \\\\\\"UnvalidatedValue\\\\\\", \\\\\\"value\\\\\\": \\\\\\"6\\\\\\"}, \\\\\\"other_style\\\\\\": \\\\\\"num\\\\\\"}]\\"}", \n+ "tool_version": "1.0.3", \n+ "type": "tool", \n+ "user_outputs": []\n+ }, \n+ "9": {\n+ "annotation": "", \n+ "id": 9, \n+ "input_connections": {\n+ "input": {\n+ "id": 8, \n+ "output_name": "out_file1"\n+ }\n+ }, \n+ "inputs": [], \n+ "name": "Combine probability to generate read profile ", \n+ "outputs": [\n+ {\n+ "name": "output", \n+ "type": "tabular"\n+ }\n+ ], \n+ "position": {\n+ "left": 722, \n+ "top": 1264\n+ }, \n+ "post_job_actions": {}, \n+ "tool_errors": null, \n+ "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/combineproballelecom/2.0.0", \n+ "tool_state": "{\\"input\\": \\"null\\", \\"__rerun_remap_job_id__\\": null, \\"__page__\\": 0}", \n+ "tool_version": "2.0.0", \n+ "type": "tool", \n+ "user_outputs": []\n+ }\n+ }\n+}\n\\ No newline at end of file\n' |