| Previous changeset 1:cdfa1afd7cb0 (2020-02-13) Next changeset 3:1df765cc6bcb (2020-02-16) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f14f2bae2b27dc04e574803c7d4442a64cfe43e4" |
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modified:
hyphy_bgm.xml macros.xml |
| b |
| diff -r cdfa1afd7cb0 -r f2c6ada85b41 hyphy_bgm.xml --- a/hyphy_bgm.xml Thu Feb 13 15:00:37 2020 -0500 +++ b/hyphy_bgm.xml Fri Feb 14 16:43:36 2020 -0500 |
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| @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="hyphy_bgm" name="HyPhy-BGM" version="@VERSION@+galaxy0"> +<tool id="hyphy_bgm" name="HyPhy-BGM" version="@VERSION@+galaxy1"> <description>- Detecting coevolving sites via Bayesian graphical models</description> <macros> <import>macros.xml</import> @@ -8,7 +8,7 @@ <command detect_errors="exit_code"><![CDATA[ ln -s '$input_file' bgm_input.fa && ln -s '$input_nhx' bgm_input.nhx && - @HYPHY_INVOCATION@ bgm + hyphy bgm --alignment ./bgm_input.fa --tree ./bgm_input.nhx --run_type $datatype.value |
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| diff -r cdfa1afd7cb0 -r f2c6ada85b41 macros.xml --- a/macros.xml Thu Feb 13 15:00:37 2020 -0500 +++ b/macros.xml Fri Feb 14 16:43:36 2020 -0500 |
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| @@ -80,6 +80,7 @@ <yield/> </requirements> </xml> + <token name="@HYPHYMPI@">mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI</token> <token name="@HYPHY_ENVIRONMENT@"><![CDATA[export HYPHY=`which hyphy` && export HYPHY_PATH=`dirname \$HYPHY` && export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]></token> |