| Previous changeset 35:355ecb4aaffd (2016-06-23) Next changeset 37:7af38f95bc8d (2016-06-23) |
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Commit message:
planemo upload |
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modified:
data_manager_gene_annotation/data_manager/data_manager.py |
| b |
| diff -r 355ecb4aaffd -r f38beb0743d5 data_manager_gene_annotation/data_manager/data_manager.py --- a/data_manager_gene_annotation/data_manager/data_manager.py Thu Jun 23 17:12:32 2016 -0400 +++ b/data_manager_gene_annotation/data_manager/data_manager.py Thu Jun 23 17:18:20 2016 -0400 |
| b |
| @@ -55,6 +55,8 @@ def main(args): + work_dir = os.getcwd() + # Attempt to download gene annotation file from given url gene_annotation_file_name = url_download(args.url) @@ -65,15 +67,11 @@ 'value': str(datetime.datetime.now()), 'dbkey': str(args.name), 'name': gene_annotation_file_name, - 'path': os.path.join(os.getcwd(), gene_annotation_file_name) + 'path': os.path.join(work_dir, gene_annotation_file_name) } } } - with open("/Users/scott/Desktop/cool.txt", "w+") as f: - f.write(os.path.join(os.getcwd(), gene_annotation_file_name)) - f.write("\n") - with open(os.path.join(args.output), "w+") as f: f.write(json.dumps(data_manager_entry)) |