| Previous changeset 6:14316f8f67a2 (2019-03-12) Next changeset 8:c684ccd89267 (2020-02-12) |
|
Commit message:
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a5136bfc124956893f4f0c91808d1c0d78c4ea01 |
|
modified:
lib.r |
| b |
| diff -r 14316f8f67a2 -r f39cd33a73a6 lib.r --- a/lib.r Tue Mar 12 11:07:11 2019 -0400 +++ b/lib.r Mon Apr 29 06:32:48 2019 -0400 |
| [ |
| @@ -333,7 +333,7 @@ files[exists] <- sub("//","/",files[exists]) # WHAT IS ON THE FILESYSTEM - filesystem_filepaths <- system(paste0("find \"$PWD/",directory,"\" -not -name '\\.*' -not -path '*conda-env*' -type f -name \"*\""), intern=T) + filesystem_filepaths <- system(paste0("find \"",getwd(),"/",directory,"\" -not -name '\\.*' -not -path '*conda-env*' -type f -name \"*\""), intern=T) filesystem_filepaths <- filesystem_filepaths[grep(filepattern, filesystem_filepaths, perl=T)] # COMPARISON |