| Next changeset 1:8b330a577046 (2022-09-28) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/getorganelle commit f981a1dde94c29df16f326e0df6aec4a27a51d87 |
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added:
get_organelle_from_reads.xml test-data/0.0.1.minima/LabelDatabase/embplant_mt.fasta test-data/0.0.1.minima/LabelDatabase/embplant_pt.fasta test-data/0.0.1.minima/SeedDatabase/embplant_mt.fasta test-data/0.0.1.minima/SeedDatabase/embplant_pt.fasta test-data/Arabidopsis_simulated.10k.1.fq.gz test-data/Arabidopsis_simulated.10k.2.fq.gz test-data/getorganelle.loc tool-data/getorganelle.loc.sample tool_data_table_conf.xml.sample tool_data_table_conf.xml.test |
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| diff -r 000000000000 -r f4394bbdf433 get_organelle_from_reads.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/get_organelle_from_reads.xml Mon Aug 22 09:59:03 2022 +0000 |
| [ |
| b'@@ -0,0 +1,289 @@\n+<tool id="get_organelle_from_reads" name="Get organelle from reads" version="@TOOL_VERSION@">\n+ <macros>\n+ <token name="@TOOL_VERSION@">1.7.6.1</token>\n+ <xml name="seed_and_genes" tokens="optional">\n+ <param type="data" argument="-s" format="fasta" optional="@OPTIONAL@" label="Seed sequence(s)" help="Fasta file to use as initial seed. A seed sequence in GetOrganelle is only used for identifying initial organelle reads."/>\n+ <param type="data" argument="--genes" format="fasta" optional="@OPTIONAL@" label="Gene sequence(s)" help="Fasta file containing protein coding genes and ribosomal RNAs extracted from a reference genome that you want to assemble."/>\n+ </xml>\n+ </macros>\n+ <xrefs>\n+ <xref type="bio.tools">getorganelle</xref>\n+ </xrefs>\n+ <requirements>\n+ <requirement type="package" version="@TOOL_VERSION@">getorganelle</requirement>\n+ </requirements>\n+ <command detect_errors="exit_code"><![CDATA[\n+ ## Link input files\n+ #import re\n+ #set ext = \'.fastq\'\n+ #if str($fastq_input.fastq_input_selector) == \'single\':\n+ #if $fastq_input.fastq_input1.ext.endswith(\'.gz\'):\n+ #set ext = \'.fastq.gz\'\n+ #end if\n+ #set $in1 = $fastq_input.fastq_input1\n+ #set $in1_name = re.sub(\'[^\\w\\-\\s]\', \'_\', str($fastq_input.fastq_input1.name)) + $ext\n+ ln -s \'$in1\' \'$in1_name\' &&\n+ #else if str($fastq_input.fastq_input_selector) == \'paired\':\n+ #if $fastq_input.fastq_input1.ext.endswith(\'.gz\'):\n+ #set ext = \'.fastq.gz\'\n+ #end if\n+ #set $in1 = $fastq_input.fastq_input1\n+ #set $in2 = $fastq_input.fastq_input2\n+ #set $in1_name = re.sub(\'[^\\w\\-\\s\\._]\', \'_\', str($fastq_input.fastq_input1.name)) + $ext\n+ #set $in2_name = re.sub(\'[^\\w\\-\\s\\._]\', \'_\', str($fastq_input.fastq_input2.name)) + $ext\n+ ln -s \'$in1\' \'$in1_name\' &&\n+ ln -s \'$in2\' \'$in2_name\' &&\n+ #else if str($fastq_input.fastq_input_selector) == \'paired_collection\':\n+ #if $fastq_input.paired_input.forward.ext.endswith(\'.gz\'):\n+ #set ext = \'.fastq.gz\'\n+ #end if\n+ #set $in1 = $fastq_input.paired_input.forward\n+ #set $in2 = $fastq_input.paired_input.reverse\n+ #set $in1_name = re.sub(\'[^\\w\\-\\s\\._]\', \'_\', str($fastq_input.paired_input.name)) + $ext\n+ #set $in2_name = re.sub(\'[^\\w\\-\\s\\._]\', \'_\', str("%s_%s" % ($fastq_input.paired_input.name, "R2"))) + $ext\n+ ln -s \'$in1\' \'$in1_name\' &&\n+ ln -s \'$in2\' \'$in2_name\' &&\n+ #end if\n+ ## GetOrganelle cmd\n+ get_organelle_from_reads.py\n+ #if str($fastq_input.fastq_input_selector) == "single":\n+ -u \'${$in1_name}\'\n+ #end if\n+ #if str($fastq_input.fastq_input_selector) == "paired":\n+ -1 \'${$in1_name}\' -2 \'${$in2_name}\'\n+ #end if\n+ #if str($fastq_input.fastq_input_selector) == "paired_collection":\n+ -1 \'${$in1_name1}\' -2 \'${$in2_name}\'\n+ #end if\n+ -o results_directory\n+ #if str($organelle_type_input.F) == "anonym":\n+ -F \'$organelle_type_input.F\'\n+ -s \'$organelle_type_input.s\'\n+ --genes \'$organelle_type_input.genes\'\n+ #else:\n+ -F \'$organelle_type_input.F\'\n+ #if $organelle_type_input.s\n+ -s \'$organelle_type_input.s\'\n+ #end if\n+ #if $organelle_type_input.genes\n+ --genes \'$organelle_type_input.genes\'\n+ #end if\n+ #end if\n+ --config-dir \'$config_dir.fields.path\'\n+ #if $settings.advanced == "advanced":\n+ #if $settings.max_reads:\n+ #if $settings.max_reads == 0:\n+ --max-reads inf\n+ #else:\n+ --max-reads $settings.max_reads\n+ #end if'..b'Raw assembly graph\'>\n+ <filter>settings[\'advanced\'] == \'advanced\' and "raw_assembly_graph" in settings[\'out\']</filter>\n+ </data>\n+ <data format="fastg" name="simplified_graph" from_work_dir="results_directory/extended_K*.assembly_graph.fastg.extend-*.fastg" label=\'${tool.name} on ${on_string}: Simplified graph\'>\n+ <filter>settings[\'advanced\'] == \'advanced\' and "simplified_graph" in settings[\'out\']</filter>\n+ </data>\n+ <data format="tsv" name="assembly_csv" from_work_dir="results_directory/extended_K*.assembly_graph.fastg.extend-*.csv" label=\'${tool.name} on ${on_string}: Contig labels\'>\n+ <filter>settings[\'advanced\'] == \'advanced\' and "contig_labels" in settings[\'out\']</filter>\n+ </data>\n+ <data format="fastq" name="seed_fastq" from_work_dir="results_directory/seed/*.fq" label=\'${tool.name} on ${on_string}: Seed fastq\'>\n+ <filter>settings[\'advanced\'] == \'advanced\' and "seed_fastq" in settings[\'out\']</filter>\n+ </data>\n+ <data format="sam" name="seed_sam" from_work_dir="results_directory/seed/*.sam" label=\'${tool.name} on ${on_string}: Seed sam\'>\n+ <filter>settings[\'advanced\'] == \'advanced\' and "seed_sam" in settings[\'out\']</filter>\n+ </data>\n+ <data format="txt" name="spades_log" from_work_dir="results_directory/extended_spades/spades.log" label=\'${tool.name} on ${on_string}: Spades log\'>\n+ <filter>settings[\'advanced\'] == \'advanced\' and "spades_log" in settings[\'out\']</filter>\n+ </data>\n+ </outputs>\n+ <tests>\n+ <test expect_num_outputs="8">\n+ <param name="config_dir" value="getorganelle_refdata"/>\n+ <param name="fastq_input_selector" value="paired"/>\n+ <param name="fastq_input1" value="Arabidopsis_simulated.10k.1.fq.gz" ftype="fastqsanger.gz"/>\n+ <param name="fastq_input2" value="Arabidopsis_simulated.10k.2.fq.gz" ftype="fastqsanger.gz"/>\n+ <param name="F" value="embplant_pt" />\n+ <param name="advanced" value="advanced" />\n+ <param name="out" value="raw_assembly_graph,simplified_graph,contig_labels,seed_fastq,seed_sam" />\n+ <assert_stdout>\n+ <has_text text="Thank you!" />\n+ </assert_stdout>\n+ <output name="logfile" >\n+ <assert_contents>\n+ <has_text text="Thank you!" />\n+ </assert_contents>\n+ </output>\n+ <output_collection name="path_sequence_list" type="list" count="2" />\n+ <output name="selected_graph" >\n+ <assert_contents>\n+ <has_n_lines n="7" />\n+ </assert_contents>\n+ </output>\n+ <output name="raw_assembly_graph" >\n+ <assert_contents>\n+ <has_text text=">EDGE" />\n+ </assert_contents>\n+ </output>\n+ <output name="simplified_graph" >\n+ <assert_contents>\n+ <has_text text=">EDGE" />\n+ </assert_contents>\n+ </output>\n+ <output name="assembly_csv" >\n+ <assert_contents>\n+ <has_text text="EDGE" />\n+ </assert_contents>\n+ </output>\n+ <output name="seed_fastq" >\n+ <assert_contents>\n+ <has_text text="@" />\n+ </assert_contents>\n+ </output>\n+ <output name="seed_sam" >\n+ <assert_contents>\n+ <has_text text="@HD" />\n+ </assert_contents>\n+ </output>\n+ </test>\n+ </tests>\n+ <help><![CDATA[\n+ GetOrganelle assembles organelle genomes from genome skimming data.\n+ See https://github.com/Kinggerm/GetOrganelle for more information.\n+ ]]></help>\n+ <citations>\n+ <citation type="doi">10.1186/s13059-020-02154-5</citation>\n+ </citations>\n+</tool>\n' |
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| diff -r 000000000000 -r f4394bbdf433 test-data/0.0.1.minima/LabelDatabase/embplant_mt.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/0.0.1.minima/LabelDatabase/embplant_mt.fasta Mon Aug 22 09:59:03 2022 +0000 |
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| b'@@ -0,0 +1,84 @@\n+>atp1 CDS - Cycas_NC_010303\n+ACGAAATTATATCCTGGAGCTGCGGAACCCACTACTATATCGGGAAGAAGAATCACCAACTATTGCACCAATTTACAAGTTGATGGGATCGGTCGAGTGGTCCCAGTTGGGGATGGGATTGCACGTGTTTATGGATCAAACGAGATTCAAGCTGGGGAAATGGTTGAATTCGCCAGCGGTGTGAAAGGAATAGCGTTGAATCCTGAGAATGAGAATGTAGGTATTGTTGTATCTGGTAGTGATACCGCCATTAAAGAAGGAGATCTTGTCAAGCGCACTGGATCTATTGTGGATGTTCCTGTGGGAAAGGCCATGTTAGGTCGTGTGGTCGATGCGTTGGGAGTACCTATTGATGGAAAAGGGGCTTTAAGCGATCACGAACGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATTGAACGTAAATCTGTGCACGAACCTATGCAAACAGGGTTGAAAGCAGTGGATAGCCCGGTTCCTATAGGCCGTGGTCAACGAGAACCGATAATCGGGGACCGACAGACTGGAAAAACTGCTATAGCTATTGATACCATATCGAACCAGAAGCGAATGAACTCAAAGGGCACCTCTGATAGTGAAAAATTGTATCGTGTCTATGTAGCGATTGGACAGAAACGCTCAACCGCGGCACAATTAGTTCAAATTCTTTCAGGAGCGGATGCTTCGGAATATCCAATTATCGTAGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTCTGGCCCCATATCCTGGGTGTGCTGCGGGAGAATATTTCCGCGATAATGGAATGCACGCATCAATAATCTATGATGATCCTAGTAAACAGGCGGTGGCATATCGACAAATGTCATTATTGCTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGGGATGTTCTCTATTTACATTCCCGTCCATCAGAAAGAGCCGCTAAACGATCGGACCAGACAGGTGCGGGTAGCTTGACCGCGTTACCCGTCATTGAAACACAAGCTGGAGACGTGTCGGCCTATATCCCTACCAATGTGATCCCCATTACAGATGGACAAATCCGTTCGGAAACAGAGCTCTTTTATCGCGGAATCAGACCTGCTATTAACGTCGGCTTATCCGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAGACAAGTACGTGGTAGTTCAAAACCAGAATTGGCACAATATCGTGAAGTGGCCGCCTCTGCTCAATCCGGGTCAGACCTTGATGCTGCTACTCAGGCACCATCAAATAGAGGTGCTAGGCTTACTGAAGTTCCGAAACAACCACAATATCCACCACTTCCTATTGAAAAACAAATTCCAGTTATTCACGCAGCTGTGAAAGGGTTTCGTGATCGAATGCCACTAGACAGAATTCCTCGGTATGAGAGAGCCATTTCAAGTAGTATAGATCCCGAATTACTACAATCCGTTCCGGAAAAAGGTGAGTTAACTAACGAAATAAGGATGAAACCAGATGCTCCTTCAAAAGAAAGCGTTAACCTTTGCTGA\n+>rps12 CDS - Cycas_NC_010303\n+ATGCCTACATCGAATCAATCGATTCGTCATGGTAGAGAGAAAAAACGGCGCACAGACCGTACTCGAGCTTCGGATAAATGTCCTCAGAAGCAAGGAGTACGCCCGCGTGTTCCGACGGGAACACCAAAAAAACCTAATCCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCAACATGATATATTTGCTTACATTCCGGGCGAAGGTCATAATCTGCAGGAACATCCTATGGTGTCGATCAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGCGAAATTCCATCGTATTCGAGGAGTCAAAGATTTGCTGGGAACTCCGGGTCGAAAAAGGGGCAGATCTAAATATGGTGCGAAGAGACCCAAATCGATACGA\n+>nad3 CDS - Cycas_NC_010303\n+ATGTTGGAATTTGCACCTATTCGTATCTATTTAGTAATCAGTTCGCTAGTTCCTTTGATCCCACTTGGTGTTCCTTTTCCATTCGCTCCCAATAGTTCGACTTATCCAGAGAAATTGTCGGCCCACGAATGTGGTTCCGATCCTTCCGGTGATGCCAGAAGTCGTTTCGATATACGATCTCATCCGGTTCCTATTTCATTCATTATCTCTGATCCGGAAGTAACCTTTTCTTTTCCCCGGGCAGTCCCTCCCAACAAGATTGATCCGTTTGGATCCCGGTCCATGATGGTCTTTTCATTGATTCCGACGATTGGATCTCCCCATGAATGGAAAAAGGGTGCTTCGGATTGGGAGTAA\n+>nad4L CDS - Cycas_NC_010303\n+ATGGATCTTGTCAAATATTTAACATTTCCTATGATCATTTCTCTCTCAGGTATTCGGGGAATCTTCCTGAATAGACGAAATATTATTATTATGTCAATGTCAATTGAATCAATGTTACTAGCTGCCAATTCGAACTTTTTGGTATTTCCCGTTTATCCGGATGATATGATGGGTCAATTATTTGCTTCATCGGTGTTAACGGTGGCAGCTGCGGAATCTGCTATTGGGTCGGCCATTCCGGTTATTACTTTCCGAATTCGAGGGACCATTGCAGTAGAATCTATTAATTGCATGAAGGGTCAA\n+>atp6 CDS - Cycas_NC_010303\n+ATGCCAAACAGCCCACTTGAGCAATTTGCCATTATCCCATTGATTCCTATGGATATAGGAAACTTGTATTTCTCATTCACAAATCCATCTTTGTCCATGCCGCTAACTATCAGTTCAGTCCTGCTTTTAGTCCATCTTGTTACTAAGAACGGAGGGGGAAACTCAGTACCAAATGCTTGGCAATCCCTGGTAGAGCTTATTTATGATTTCGTGCCGAACCCGGTGAACGAACAAATAGGTGGTCTTTCCGGAAATGTTAAACAAAAGTTTCCCCCTCGCATCTCGGTCACTTTTACTTCTTCGTTATTTCGTAATCCCCAGGGTATGATACCATATAGCTCCACAGTTACAAGTCATTTCATCATTACTTTGGGTCCCCCATTTCCGATTTCTATTGGAATTACTATAGTGGGATCTCAAAGAAATGGGCTTCATTTCTCCAGCTCCTCATCACCCGCAGGAGTACCACTGCCGTTAGCACCTTTCTCAGTACTCCTTGAGCTAATCCCTCATTGTTCTCGCGCATCAAGCTCAGGAATACGTTTATTTGCTAATATGATGGCTGGTCATAGTTCAGTAAAGATCTCAAGTGGGTCCGCTCGGACTATGCTATGTATGAATAATATAATGTATTTCATAGGAGATCTTGGTCCTTCATCAATAGTTTTTGCACCGACCGGTTCGGAATTAGGTGTAGCTATATCACAAGCTCATGTTTCTACAATCTCAATTTGTACTTACTCGAATGATGCTACAAATCCTCATCGA\n+>rrn5 gene - Cycas_NC_010303\n+CCGGGCACTACGGTAAGACGTGAAAACACCCGATCCCATTCCGACCTCGATATGTGAAATCGTCTTGCGCCATATGTACTGAGATCGTTCGGGAGACATGGTCCAAGCCCGTTC\n+>rrnS gene - Cycas_NC_010303\n+ATCATACTCAAAAAAAGAGTTCGATCCTGGCTCAGAACGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGCCCCTACGTGTTTCGGGGGGCAGAAGGGCAAGATGAATGGCTCCTAGCTAGAGTCAAATTACGCATATTAGCTGCGGGGTTTTTCGTGGGAACAGTTGAGAACAAAGTGGCGAACGGGTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAGTAAGCGAAAGCTAAAAAGCGCTGTTTGATGAGCCCGCGTAGTATTAGGTAGTTGGTTGGGTAAGG'..b'TTTGCGCCGCCTTCCTCATTCGTAAAGAAGCCGCCGGGTTGACCCCGGAACGAAGAAAGGCCGAAGGTAGAGAACGCCCTTTATCTAATAAGAAGAAGAACAGGGTAGCGTTCTCCATGAAAGACCCTATTAAGTATTGCAAGAGAAGGGGCCTGCTGATAGAGCTGGGCGGGGAGGCGATACCAGTTATCAGGTTAGAAAGACGCCTAGCCCGTAAGCAGGGGCTATCCCCCGTTCACTTAAATGACCTATACTTAATCAGGATTTGTTACGCGCGATATGCCGACGACTTACCACTGGGAATCGTGGGTACCGTAGAGCTTATAAGAGGAATCCAAAAACGTATCACCCACTTCCTACAATCCGGCCCGAACCTTGAGGTAGGCTCTGCAAGATCAACTTACATAGCTGCACGGAGTACGGTAGAATCCCCCGGTACGGTCATTCGGGAAGTCCCTTCGGGGACGACTCCCATACAATTATTGCGAGAGCTGGAGAAGCGTCGGAGAGTAAAGCACCGTATCCATCTCACAGCTCCCCACCTACGCTCCGCCATCCATTCCGAGTTAGAGGACCTAGGGAGGAGTATCCTGATCCAACAGCTGACGAGGGGGATGAGCGGAACAGGGAGTCTACAGGACGCGGTTCAACTGGCGGAGACTCTTGGAACAGCTGGAGTAAGAAGTCCCCGAGTGAGCGCGAGCGTATTATGGGAGACCGTCAAGCACATCCGGCAAGGATCAAGGGAAATCTTGTTGTTGCATAGCCCAGGTCGGAGCAACGTGCCATCAGACGTTCAACAGGCAGTCTCACGATCGGGCAAATCGTTGAGCGTCTGGAAGTTGTCATTGCATACTCCCAGAGAAGCGCTGGGAGGTCGGAAGGCGGCGGGGGAAGGAGGGGGACACTGGGAACAGACGGGATCTTTCAGCAGCAAATTACCCATACAGATAAAGGCGCCTATGAAAAAGATACTCCAAAGGCTTCGGGATCGAGGTATCATTAGCCGGAGAAGACCCTGGCCAACCCACGTGGCCTGCTTGACGAACGTCAGCGACGAAGACATCGTAAATCGGTTCGCGGGCGTCGCGATAAGTCCTCTGTCCCACCATAGGTGCTGCGACAACCTCTATCAAGTCCGAACGATTGTCGACTACCAGATCCGCTGGTCCGCTGTATTCACCCCTGCCCACAAGCACAAATCCTCGGCGCGGAAGATAATCCCAAAGTACTCCAAAGACTCACATATAGTCAATAAAGAAGGTGGTAAGACCCCTGCCGAGTTCCCCAACAGCATAGAGCTTAGGAAGCTCGGACCAGAGTCATTCCTTACAAGTCAAGATCTGAACAACAAGGAGCACGCGTACAAGACCTTATATCAG\n+>rps4 CDS - Cycas_NC_010303\n+ATGCCTGCATCAGGATCCAAAACTTGTCGTCCACTTTCAGGAAATGTTCGGAACAAAAAACTTACAAGAATACAACGCCGCATTCCCCGAAGATTGAGGAGCAAGAGAAGATCTATTAAGAAGAATATTTATCCGAGACAAAATCTTAACAGTTACATAAAATTACAAACTATACGAAAGTTGCCCCTTTCTCATGGAAATCTACCCATCATAAAGATGCACGGAGGAACAGAACGAACTTCATATATACCTTTTCTATTCAATCCAGAAACAAGATCGGACGTTATTCCGGTTCGTCCCCATTTTCGTGAAACTATTCCTCAAGCAAGGCAGCCGATAAGTCATCGAAAGATTCGTGCGAATAATGAAATGGTCAACATTACTCGTTCTAAAGTGTCCCACGGCGATCCAATACCTATTAAAGATAATTATGTAAGAACCATGGGGAGAGAAATAATTAAATATTCCTATACCGAAATCTTAGTAAATGGAATAATGAGGAAATCTCTAGATCACCCGGAAAGAATGTGGAGAAAAACCGAAACAAAATGGTTCCGCCTACTGAAGAAAAAAAAAGGGTGCCGCCTCCCACCAAAATCCTGGTTCTCGCAACAGTTGCGTTCTTCTGTGCAAGAAAAAGACTTGGAGAGAGAAAATCTTTATAGATCCGAAAGAGTATGCTTAGGCAGTTTATTTGCTGAGCACAGCAAAATGAAGAGAGATTTGTATCATTTAAAATCCTTATTATTACTGAAGAGGAGGAACGGAAAGAACCGAAATATTCCTGCTCGAACAATAAGTCTTATTGTTGGTAACGGAAATCTCTATAGCAATTCAACTCATTGTTTCGAATCCCCTTATTGCAATACTAGGAAGAGAAGAATCAAAGGGATCAAACTACCTACTCATTATTCGGAGGTCAATCATAGGACACCGAAAGCTGTGGTATCTTATGGACCTGACATAGGTCACATCCCTCATGACATGAGATCGAAAGATCCAAACCTTCCCCTTCGGAGCAGGAACGAACGTGGCCAAAACATATAA\n+>mttB CDS - Cycas_NC_010303\n+ATGAATTTTGCATCGGAAACTATTCCGGGAGAAGTTAGAATTCGTTCCGTTCGGATATTTATTGGTCCTAGTTCGACATGGTTTACGCGTCATTGGTTCCCGGAAGAGTCAATATTTCCATCAGCTAAACCCTCTCTGACCCTGCCTTTGGACCCGTATCCCGTTCGTACACAATCAACGGAGGCCTTTTCAACATATGTTACTACGTCTCCAATAGCATGCTCCTACTCCGTCTTTCCCTTCATGAGTTATCAAATTTGGTGCTCCTCGATCCCCAGTTGCTATGGAGGACGAAGGACGAAATACAATCAATTTTTCCACTTAAGTGGTTTTCGCTTCTTTTCGTTCTTGTTTCTAACTCTTTCCCGGGTAGTTCCCAATGTTTGGCACTTCCCATACTTTGTGGGTACAACATCAACTGATTTGCTCATGATCAAGTCACAACCTAAGATTTCTGACCATACTATGTCAACTGTTCGTATTTCGTTCATTTCATCAATATGCTCCCAAGTACCCGTAATTGTGATCCGTTCGCCAGAGCCAAAGGGTATTTCTGTGAAAACCTCCACGGAAAATCGTCGTTTTTTCATGGTTTTTCCGCTTCCCACAGCAGCTTTTTCCACACCTCCAGATATCTGGTGTCAAATCGTCGCTCGTTCACCTATTTATTCGGTAATAGAGCTGACTATCTCCGTGGCATCGATTGTACGAGTTCGTAAAGAGCAACAACTCCTATCTGGACAGGTGGGCCAGGATGAGGAAGAATCTAGTGCTTCCTGA\n+>rps7 CDS - Cycas_NC_010303\n+ACGAACAGAGGAGGTGGGGGGGAACGGAACATTTCGCTTTTATGCGCGCGCATATTGCATTATATAGATAGATTGGCCGAGAAGGATGAGCAGAAGCAATTGCGTGATAGGGAGTTGGCCGAAAAAGATGGACAGAAACAATTGCATAATATAAATTCATCGGCGGCCGGGGGAGAGGGAGGGCTTTTGTCACCAAAACCTAGGGGCCGTAGGGCGGGCACATACAATCTCTTGGAGATTTTGAGCTATATCGGGGGATTGGATGGTAAACAGAAACAATTGATCAATAAGTCAGTCAACTTTCGCACGATCGATGGCAAAAGAACGAAAGCTCGTGCTATTGCTTATCAAACTTTTCATCGCCCAGCTCGAACTGAACGCGATGTGATCAAACTTCTGGTTAATGCCGTAGAGAATATAAAGCCCATATGCGAAGCGGGAAAAGTAAGAGTCGCAGGTACTACTTATAATGTACCTGAGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGGAGCAGCTTTCAAGCGACGTATAAGCAACGGGATAGGCTCAGATAAATGTTTATCTGCTGAGACACTGGATGCTCACCGAAAGAGGGGAATTGCACGTAAGAAAAGGGATGATCCTCATGAACCGGCTTCCACCAATCGAAGTTTCGCGCATCTCAGATGGTGGTAA\n' |
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| diff -r 000000000000 -r f4394bbdf433 test-data/0.0.1.minima/LabelDatabase/embplant_pt.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/0.0.1.minima/LabelDatabase/embplant_pt.fasta Mon Aug 22 09:59:03 2022 +0000 |
| b |
| b'@@ -0,0 +1,170 @@\n+>accD gene - Amborella_AJ506156_2\n+ATGTTGTCTAATGAAGAGTTAGAGCACAAGTGTGAACTAAGTAAATCGATGGACAGTCTTGGTCTTATTGGAAATACCGGTGCAGGTGGAGGCCCTACTCTAATATTCGATGTCAGGGACATTTTGAGTTTGATCTATGATGACACTTTTAAGCTTAAGGATAGGAATGGTGACAGCTATTCCGTATATTTTGATATTGACAATAAGATCTTTGAGATTGACGATGATAGTGACTCTCTGAGTGGACTAGATATTGAAAATCAGAATCAGATCTTCTTTGATATTTACAATGATAGTGACTCTCTGAGTGAACTAGATAGTGAAAATAAGAACTTTGAGATTCACAATGAGAGTGACTTTATGAGTAAACTAGAAAGTTCTTTTTTTAGTTATCTCACTTATAGTTGTCTCAAACGAAGAAGTTCTTTTTCTAGTTATCCTACTTCTCTCACTTCTAGTAATCTCAATAGTGGATCTAAGAGTTACAACCCCTACTATGATCCTTACATGCATGACACTAGATATAGTTGGAATAATGACATTAACATTAATAGTTGCATTGACAGTTATATTCGTTGTGAAATCGATTCCATTTCAAGTGGTAGCGACAATTGCAGTGACAGTTATATTTATAGTTACATCTGTAGTGAGGGGGTAAGTTATAGTGACAATGGGAGTTCTAGTATAAGAACTAGAACTAGTACTAGTAGTGGCAGTTCTTACCATATAAGAGGAAGATCTAATAATTTCGAGAAAAATAAAAAATTAAAAAAATTATGGGTTCAATGCGAGAATTGTTATGCATTGAATTATAATAAATTATTTAGGTCTAAAATGAATGTTTGTGAACAATGTGGATATCACTTGAAAATGAGTAGTTCAGATAGAATCGAACTCTCGATTGATCCAGGCACTTGGCATCCTATGGATGAAGATATGGTCTCCACGGATCCTATTGAATTTCATTCGGAGGAGGAACCTTATAGAGATCGCATCGATTCTTATCAAAGACAAGCAGGTTTAACCGATGCTGTTCAAACAGGCATAGGTCAACTAGAAGGTATTCCGATAGCAATTGGAGTTATGGATTTTCAGTTCATGGGAGGTAGTATGGGATCCGTAGTAGGCGAGAAAATAACTCGTTTGATCGAGTATGCTATTGATAGATCTCTCCCAGTTGTTATTGTGTGTGCTTCTGGAGGAGCACGCATGCAAGAAGGAGGTTTGAGCTTGATGCAAATGGCTAAAATATCTTCCGCTTCATATAATTATCAATCCAATAAAAAGTTATTCTATGTATCAATCCTTACATCTCCTACAACCGGTGGAGTGACTGCGAGTTTCGGTATGTTGGGAGATATCATTATTGCCGAACCCAATGCCTACGTAGCATTTGCAGGCAAAAGAGTAATTGAAGAAACATTAAATAAGAAAATACCTGATGGTTTGCAAGTAGCTGAGTATTCATTCCATAAGGGCTTATTCGATTCAATCGTACCACGTAATCCTTTAAAAGGTGTTCCAAGTGAGTTATTTCAGCTCCACGGTTTCTTTTCTTCTACTTTCCATCCCCTTAAATCAAATAAAGTAAAGCGCTAA\n+>atpA gene - Amborella_AJ506156_2\n+ATGGTAACCATTCGAGCTGACGAAATTAGTAATATTATCCGTGAACGGATTGAGCAATATAATAGAGAAGTAAAGATTGTCAATACTGGCACTGTACTTCAAGTGGGCGACGGCATTGCTCGTATTCATGGTCTTGATGAAGTAATGGCGGGCGAATTAGTAGAATTTGAAGAGAGTACAATAGGCATTGCTCCAAATTTGGAATCCAATAATGTTGGTGTTGTATTAATGGGTGATGGTTTAATGATACAAGAGGGCAGTTCTGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTGAGTGAGGCTTATTTAGGTCGTGTTATAAATGCTCTGGCTAAACCTATTGATGGGAGAGGTGAAATTTCATCTTCCGAATCTCGGTTAATTGAATCCCCCGCACCAGGTATTATTTCGAGACGTTCCGTATATGAACCTCTTCAAACAGGTCTTATTGCTATTGATTCCATGATTCCTATAGGACGCGGTCAGCGAGAATTAATTATTGGGGACAGACAGACCGGTAAAACAGCCGTAGCTACAGATACTATTCTGAATCAAAAGGGGCAAAATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCCGTGGCTCAGGTAGTGACTACTTTCCAGGAACAAGGAGCAATGGAATACACTATTGTGGTAGCTGAAACGGCGGATTCACCTGCTACATTACAATACCTCGCTCCTTATACAGGAGCAGCCTTGGCTGAATATTTTATGTACCGTGAACGACATACTTTAATAATTCATGATGATCCCTCTAAACAAGCACAAGCTTATCGCCAAATGTCTCTTCTATTAAGAAGACCGCCTGGTCGCGAAGCTTATCCAGGAGATGTTTTTTATTTGCATTCCCGACTTTTGGAAAGAGCCGCTAAATCAAGTTCTCGTTTAGGCGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACTCAATCTGGGGACGTTTCGGCTTATATTCCCACTAATGTAATTTCCATTACAGATGGACAAATCTTCTTATCTGCCGATCTATTCAATGCTGGAATCCGGCCTGCTATTAATGTGGGTATTTCCGTTTCCAGAGTAGGATCCGCAGCTCAAATTAAAGCTATGAAACAAGTAGCTGGCAAATCAAAATTGGAACTGGCTCAATTTGCAGAGTTAGAAGCCTTTGCACAATTCGCTTCTGATCTCGATAAAGCTACTCAGAATCAATTGGCAAGAGGTCAACGATTGCGCGAGTTGCTCAAACAATCCCAAGCAGCCCCTCTCGCGGTGGAAGAACAGGTAGTTACTATTTATACAGGAGCGAATGGGTATCTTGATCCATTAGAAATTGGACAGGTGAAGAAATTTCTCGTTCAGTTACGTACTTATTTAAGAACAAATAAGCCTCAGTTCCAAGAAATCATATCTTCTACCCGGACGTTCACCGAGGAAGCAGAAGCCATTCTGAAAGAAGCTATTCAGGAACAGATAGAACTGTTTCTATTTCAGGAACAAACATAA\n+>atpB gene - Amborella_AJ506156_2\n+ATGAGAATCAATCCTACTACTTCTGGTTCTGGTTCCGGGGCTTCTACACTTGCGGAAAAAAGCGTGGGACGTATCGCTCAAATCATTGGTCCGGTACTGGATGTAGCTTTTCCCCCGGGCAAGATGCCCAATATTTACAACTCTTTGGTAGTTAAGGGTCGAGATACTGCCGGTCAGCAAATTAATGTGACTTGTGAGGTACAACAATTATTAGGAAATAATCGAGTTAGAACGGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTAAGTGTTCCGGTTGGCGAAGCTACTCTCGGACGAATTTTCAACGTTCTTGGAGAACCAGTTGATAATTTAGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCTGCGCCTGCCTTTATACAGTTAGATACCAAATTATCAATCTTTGAAACAGGCATTAAAGTGGTGGATCTTTTAGCTCCTTATCGTCGTGGAGGAAAAATCGGGCTATTCGGGGGAGCCGGAGTGGGTAAAACAGTACTCATCATGGAATTGATCAATAACATTGCCAAAGCTCACGGAGGTGTATCTGTATTTGGCGGAGTAGGAGAACGTACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCCGGAGTGATTAATGAACAAAATATTGCAGAATCAAAAGTCGCTCTAGTCTATGGTCAGATGAATGAACCGCCGGGAGCTCGGATGA'..b'CATAGATCCTATATCTACCTATATGAAGAAGAAATCATGTAAGGAAGGGGATTCTTATTTGTACAAATGGTACTTCGAACTTGGAACGAGCATAAAGAAATTAACGACACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGCTCAAGATCTTTGGTCTCCACCCGGACCCGATGAAAAAAATTGGATCACTTCTTATGGATTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGGCGCTCTGGTGGGATCCTCACGGACAGAAAAAGATTGCAGTCAGTTTGATAATGATCGAGTGACATTGCTTCTTCGGTCCGAACCAAGGAATCCGTTAGATATGATGCAAAATGGATCTTGTTCTATCGTTGATCAGAGATTTCTATATGAAAAATACGAATCGGAGTTTGAAGAAGGGGAAGGAGAAGGAACCCTCGACCCGCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGTGGCAATCTATTTGATTGTATCGAAAGGCCCAATGAATCGAGATTTCCCTATCGGTCCAGGTCATTTCGGGGCAAGCAGATCATTTCTCATAAAGAGGATGAGCTTCAAGAGAATGATTTGGAGTTCTTGCAGAGTGGAACCATGCAGTACCAGACACGAGATAGATCCTCCAAAGAACAAGGGTTTTTTCAAATAAGCCAATTCATTTGGGACCCCGCAGATCCATTCTTTTTCCTATTCAAAGATCAGCCCTTTGTCTCTGTGTTTGCACGTCGAGAATTCTTTGCAGATGAAGAGATGTCAAAGGGGCTTATTACTTCCCAAACACATTCTCCTACATCTATATATGAACGCTGGTTGATCAAGAATACGCAAGAAAAGCACTTCGAATTGTTGATTCATCGCCAGAGATGGCTTAGCACCAATAGTTCATTATCTAATGGATCTTTCCGTTCTAATACGCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACGCTATTGGATCAAATGGCAAAGACATTGTTGAGAAAGAGATGGCTTTTCCCGGATGAAATGAAACATTTGATTCATGTAACAGGAGAAAGATTTCCCATTCCTTAG\n+>ycf3 gene - Amborella_AJ506156_2\n+ATGCCTAGATCTCGGATAAATGGCAATTTTATCGATAAGACCTCTTCAATTGTAGCCAATATCTTATTACGGATCATTCCGACGACTTCAGGAGAAAAAGAGGCATTTACCTATTACAGAGATGGTGCGATTTGATTCTTTTTTTACTTACCACTCCCATCCTTACGAGAAATTCCGGATGGAAAGAAAAAATTGTTGAAAGAAACCCACGCTTGGTGAAGGTGAAGTTCGTAGATAGAACAATACCTTCTGTCGTGTATCCACGATTGATGCAGCCTCAGATGCTTGAATTGTTGATTCTAGTATTGAGCGAAAGGTTACACCTATAGGTTCTCTATTGCGGGTCAATCCTACTGTACTAGTACCAATAGGCGGCATAGGGGAAGAAGCACTACACCTAGAAATCAACAACATAAAAACTTTGTTATAAATTATCCCTTTTGCTCTATTGGGATTGGGACTAACAAGAATGGTTGGGACAACAAACATCCATCTCGTTCGTACTTTGGATACCCGTATAACCATCGAAGATCGTTGAAGTGTCTAATTCCTGGAAATATGGAGCGTTGAGGACAAAGAAATTGTTGGGGGAAGCTACCATTTTTATCTAGGACCAAGACGCTTGGTATTAAGACATTCAGAAAGGGCCTCTTGCAGGAAGGCTGGCTAGAGATTTCTTGTAAAAACACCAGCCCCTGTCAGTTTATAACATAATGAGAATATTTTAATCTTTTTTGATTCCATAGATTATTCCTCTTATTACTATGCACAGAAGGGGAGGAGCCGTATGAGATGGAAATCTCACGTACGGTTCTGGAACGGAGATCCTTTGAATGGAATGAACGACCGTAACGGATGTCAGCTCAATCTGAAGGAAATTATGCGGAAGCTTTACAGAATTATTATGAAGCTACGCGACCAGAAATTGATCCCTATGATCGAAGTTATATACTCTATAATATAGGACTTATCCACACAAGCAACGGAGAACATACGAAGGCTTTGGAATATTATTTTCGGGCACTAGAACGAAATCCATTCTTACCACAAGCTTCTAATAATATGGCCGTGATCTGTCATTACGTGCGACTATCTCTACTATAGAATAGAAAGAAGAATAGAAAGAGAATAGAATAATAATAATAAAGAATAAGAAAAAGAAGAATAATAAAAAAGTAAAGAAGGAAAGAAAGAGAAAATCCGCTAGTAAATACTAGAAAGAGAAACAAACAAAAGAAAACAAAAAAGGCCTTCTACATATACATCGTGCAAAGGAACGGTTTTTATCAGCTGTAGCAAAGAAAGAGACTTCATAGGAGCCGGGATATGAAGAAATGGATATGGCCTATATACTGATTTCTATGGATAAAAGATCTAATTGATAGAGGAAGCACCGTAAAGATCAATGATTGAGGTTTTGGGCCCATACAATAAGACCTGCTTACTTATGTCAAGATATGAGATATAAAGTTAGGAATCAACTTATGTAATAGAGTTGATCCACTAAGGTGCTGAGCAGCGGTGTAGCATCAGATCCCAAAGATAGTAAGTCCTTTATTATCGAGAAAGGTATTTTTCAAAGATTCTATAATGAATTTCTATACGAACGAAAATGAGATAGTTACCTTTCAGAAAATTCTAACGATAGGGGGAGATGGAGATATCTATGCTTCAGCTTCATTCTTCTGAAGGTGGGAGAAGAGATAAAACTGATTATTTGATTGATGGAAATTTGAGTTTGAAAATCATGTAATTAACCTCTTCTGGTTATTTGGTTAATTCCGGAAAATGGGATGGATTTACGAGAAATCTCATTCAGTTAGATACAGTAGATTAAGACGGAACGCCAAAAGAGTTGACTGCTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTGATCCACCTATCCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATCGCAGAGACTTGGTCCGATCAAGCAGCTGAGTATTGGAAACAAGCTATAGCGCTTACTCCAGGTAATTATATTGAAGCACAGAATTGGTTGAAGATCACGAGGCGCTTCGAATAA\n+>ycf4 gene - Amborella_AJ506156_2\n+ATGAACTGGCGATCAGAACGTATATGGATAGAACTTATAACAGGTTCTCGAAAAACAAGTAATTTATGTTGGGCCTGTATACTTTTTTTAGGTTCACTAGGGTTCTTATTAGTTGGAACTTCCAGTTATCTTGGCAGGAATCTGATATCCTTATTTCCGTCTCAGCAAATCCTTTTTTTTCCACAAGGGATTGTGATGTCTTTCTATGGTATCGCAGGTCTGTTCATTAGCTCCTATTTGTGGTGCACAATTCTGTGGAATGTAGGTAGTGGTTATGATAGATTTGATAGAAAAGAAGGAATAGTGTGTATTTTTCGTTGGGGATTTCCTGGAAGAAATCGTCGTATCTTCTTTCGATTCCTTATGAGAGATATTCGGTCAATCAGAATGGAAGTGAAAGAAGGTATTTATCCTCGTCGTGTCCTTTCTATTGAAATAAGAAGCCAGGGATCCATTCCCTTGACTCGTACTGATGAAAATTTCACTCCACGAGAAATTGAGCAAAAAGCTGCTGAATTGGCCTATTTCTTGCGCGTACCAATTGAAGTATTTCGAACCAAGGAATGGATACTTTCTCGGCATGGGGTAGGAAACCCAAGAATCCTTTTTAATACAACTGATCTTTCTTCGGAACAACTGCTCATTCGATCAAAACATGTTAGTGTTAGATCCTATTTCCGCTCCCTTCTGTTCCCCGTCTGCGGCTAG\n' |
| b |
| diff -r 000000000000 -r f4394bbdf433 test-data/0.0.1.minima/SeedDatabase/embplant_mt.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/0.0.1.minima/SeedDatabase/embplant_mt.fasta Mon Aug 22 09:59:03 2022 +0000 |
| b |
| b'@@ -0,0 +1,5734 @@\n+>NC_015121.1_Vigna_radiata_mitochondrion_complete_genome\n+ATGACAAATCCGGTCCGATGGCTGTTCTCCACTAACCACAAGGATATAGGGACTCTATATTTCATCTTCG\n+GTGCCATTGCTGGAGTGATGGGCACATGCTTCTCCGTATTGATTCGTATGGAATTAGCACGACCCGGCGA\n+TCAAATTCTTGGTGGGAATCATCAACTTTATAATGTTTTAATAACGGCTCACGCTTTTTTAATGATCTTT\n+TTTATGGTTATGCCGGCGATGATAGGTGGATCTGGTAATTGGTCTGTTCCGATTCTGATAGGTGCACCTG\n+ACATGGCATTTCCACGATTAAATAATATTTCATTCTGGTTGTTGCCGCCAAGTCTCTTGCTCCTATTAAG\n+CTCAGCCTTAGTAGAAGTGGGTAGCGGCACTGGGTGGACGGTCTATCCGCCCTTAAGTGGTATTACCAGC\n+CATTCTGGAGGAGCAGTTGATTCAGCAATTTCTAGTCTTCATCTATCTGGTGTTTCATCCATTTTAGGTT\n+CTATCAATTTTATAACAACTATCTCCAACATGCGTGGACCTGGAATGACTATGCATAGATCACCCCTATT\n+TGTGTGGTCCGTTCCAGTAACAGCATTCCCACTTTTATTATCACTTCCGGTACTGGCAGGGGCAATAACA\n+ATGTTATTAACCGATCGAAACTTTAATACAACCTTTTCTGATCCCGCAGGAGGGGGAGACCCCATCTTAT\n+ACCAGCATCTCTTTCGGTTCTTCGGTCATCCAGAGGTGTATATTCCCATTCTGCCTGGATCCGGTATCAT\n+AAGTCATATCGTTTCGACTTTTTCGGGAAAACCGGTCTTCGGGTATCTAGGCATGGTTTATGCCATGATC\n+AGTATAGGTGTTCTTGGATTTCTTGTTTGGGCTCATCATATGTTTACTGTGGGCTTAGACGTTGATACCC\n+GTGCCTACTTCACCGCAGCTACCATGATCATAGCTGTCCCCACTGGAATTAAAATCTTTAGTTGGATCGC\n+TACCATGTGGGGGGGTTCGATACAATACAAAACACCCATGTTATTTGCTGTAGGGTTCATCTTTTTGTTC\n+ACCATAGGAGGACTCACTGGAATAGTCCTGGCAAATTCTGGGCTAGACATTGCTCTACATGATACTTATT\n+ATGTGGTTGCACATTTCCATTATGTACTTTCTATGGGAGCCGTTTTTGCTTTATTTGCAGGATTTCACTA\n+TTGGGTGGGTAAAATCTTTGGCCGGACATACCCTGAAACTTTAGGTCAAATCCATTTTTGGATCACTTTT\n+TTCGGAGTTAATCTGACCCTCTTTCCCATGCATTTCTTAGGGCTTTCGGGTATGCCACGTCGCATTCCAG\n+ATTATCCAGATGCTTACGCTGGATGGAATGCCCTTAGCAGTTTTGGCTCTTATATATCCGTAGTTGGGAT\n+TTGTCGTTTCTTCGTGGTCGTAACAATCACTTCAACCAGTGGAAATAACATAACAAGGGCGAACATTCCT\n+TGGGCTGTGGAACAAAATTCAACCACACTGGAATGGCTGGTACAAAGTCCTCCAGCTTTTCATACTTTTG\n+GAGAACTTCCAGCTATCAAGGAGACGAAAAGCTATGTGAAGTAAAAGAAGAAAAGGTCGCCGACTGCTAC\n+TAAGAACCTAACAGAACTTTTCAAAATGTGGGTTCCAACGAAGAAGAGTTGAGGACCAACTTCGACCTAA\n+TTGAAGAGTTAGGAAAGCAAGCTCAGTTCAGAATGGCTACTTACCAACAGAGGATAGCGAGGTACTACAA\n+GGCCAGAGTTCAATTTGGAAATTGGATCGAGCTGAGCCGGAGCTGCTCCTACTTACTATGACTGGACAGC\n+AGTGGACTCTTTCTCAAAGTCTGACCCTGCCACCTATATTTGATTGGATGAAGCAACCATCACTGAAGCA\n+ATGGATTTAGTAGCCAGCTCAACTCCATTTAACAGGTTAGTAGCGAAAGGTAAGGCGAGTGGACGAGAAG\n+AAGGAGCAAGCCCTCTTAAGTGAAGGGAAGAGAATCAAGGCTATTTTACTTTACTAGACTAGCTACCGAG\n+CTGACTCAACTCAAGGAAGCCGGAAAGAAAGGGCTTCAAGACAGCTTCGGCAACATAAACTCGAGCTGAG\n+GAATACGGAAGAGAAGCGGATTCAACTCAATCTTAGCCTAAGAGCAGTTCAGAGAAGAGAATCAAAGGTC\n+AACGGCCAATGGAGGATTTCTCCCCCCCCGGATTCATCTTAAACCGACCGAGATTACATCCAGCACGAGA\n+GCAAGAAAAGGAAATGGTCTCCGTGCAGCTTCAAGTCACGCCACTCTCACATAGAATCATGGTCACATCT\n+GTAGTATATATAGTTTATAGAAGCGGAATGCCAATCGACACTGGTAGCCATCGGGATTGAGTTCAGCTGC\n+TTTTTACGATACTGACGAATGAGTAAACGGAAGAATGAATCAGATGAGCTCCAGTCTGGACTCTCATTGG\n+TCAAACAGGCGCAACGGGCCAAGAGAGAATAAAAGGACACCAGAAGAGAAGAGCAAGAAAAAGAGCTGTA\n+TGATAAGAGTCCTTATCCTACCCACCCCATTTTTTTAGTTTATGGGAGTAGCAAGAACAGCTCAATTGAA\n+AAGGTGAGCCGCGTACCAAAGAGCTCGATAAGCTATTCTTTTTTTCAGTCCGGTTGACTCGATAGGAAGA\n+AAAGAGCATCAAGGTTTTTCGAAGGCTTCAAGCCCTGTTTCAGCGGAGAGCATGGATTCCCCTTGCACCT\n+CTCTTCCACAGGCACGTTTCAAGAAGGTGCCTACACTCTAGTGTACAAAGTGGCATAAAGTGATTCTTTT\n+CGGGTTCGGTCAGGAGGGACAAAAGAGAGATGCTTTCTATCAGTCAAAAGCAGATACCGCCCCCCCTCAT\n+GCTCCCACGGTCCGCTTACCGAGGAATAGAAAGGGAGGACCGGGGGCCAGAGCAAGTTGGGTTGGGGTAT\n+AGAGCCGTAAGCGCGGTGGGGGGGTGACAGAGGACGTGCTCGTACGGTTCAAAGAAGGGTATGATCAACG\n+AGTTTATTGTTGGGAACTTTCACTCCTCTATATTCGAAATATGCCTTTCTAGGAGCATTACGATCTGCAG\n+CTCAAATGGTCTCTTATGAAGTCTCTATTGGTCTTATTCTTATTGTGCGCCTTGTGGTGAGCGCGTTTGG\n+ATCCGCGAAGGCAATCGCTCGGATGTTCCCCTAACCCAACCCGGGAACGGACCGGAGGGAACCGCAGCAT\n+GGGGAATGTCCGCGTCTCGTCGCAAGGCTCATTTCTCGTTTTTGGTCATAGGGCGGGCGGATTGATCTGA\n+TCAAGGGCCGGGGCACAAGGGTCCTGGTACTATCCAGGTGCGAAGAACCCCGGAGGTGACTGCAATGAGC\n+AGAAATCTCACTCACCGGCCTAAACGACGAGCAAACACTCGAACGTGAGAGCAAGGGATCACCTAACGAA\n+TGGACGAGCTCCAAGGAGGGAGGAGGAAGGCAAGAACCATGCTTTCAGAGAAGTGGCGGTCCGAATCTTA\n+TCTGAACTGCGATAATAACTTACTAAGCCATGCCATAAGGGTCATTCTCCAAACGGGACGGGGTCAAGCC\n+TTTCGATTTTTGAGTAGGTTGGGTGACAGATCGGCCATAGGAGTACTCCGGGATATAAACCAGGGCAACC\n+AATGTCGAGCATACGACGATGCCGCCCGTTTTCATTTCGTGGAAGTCCCCGGCAGAGGAAAGGGCTGTAG\n+GTGATGGCGCGTTCTGCTTCTTATCTAGAGAGGGGCGCTGAAATCGTTCCTATTGGGTCGTGCGTGGCAG\n+CTGGTATAGATGAATAAAGGCGGGCCGCGGGAC'..b'GAGCTTCAGCAAAA\n+CTAGGTAGGTAGCTTTCGCTAATGAGAGATGGATTTGGGGATTCGATTAGGTCTCCTAATTCATGGAATT\n+CGTTTTCTCTTTATTAGTTTCTTTTTAAAGCAGCATTCTCCCTTGACTCGATCTTTCATTGAATTATCGA\n+TAGAACGTTGATCAATATTCAGGAAGAGATCGAGGATCACAGCAGGATCCTATCTGATCTTTGTCAACAC\n+AGGACTCGAAGCCCCCTGCTCAAACTAAAGGGTAATCCTTCGGAATTGAAAATTCCTATCTTTCGGATTT\n+CTTCTATTAATTATAGTGGAGGGGAGAAGACTCATTTTTCATTCTATTATCTATAGAGGGGGGGAGCCAT\n+TGTGAAGCCTAGAGAGGCGGAAGCGGCAAATCGCTTCTACCGAGTTCCACAACAGCAGCTTAGCTTAGTA\n+GCTTAACTCTTTCTACTGGCGTGGCGCTGCTGGATGCTTCTGATCAATAGAACAGGAAGAGGAGTAAGCC\n+AAAAAGAAAGACCACCAAAAGTAACGACCACCAAGATACGCATAGTGATTCGATCTTTTGATCACCCATT\n+TTTGGAAAACCATTTTGGGGGGCTTCAGCCTTACACACGGAAGATTGGATTGCCTGAATCACGAGTCTTA\n+TATACTGTGTTACGATCACCTCATATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATAAAGAAAA\n+AATTTCTGATCATAAAAACAGAAAAGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCGAC\n+TCGGAGGACATAAGACTTCTTGGTCAAGCCAAAATGCCGGCAGAATGCTCCTACCCCACCATGCCTGGCC\n+CTTTACCTTACCTTAAGAAAGAAGAAATGGGGGTATGAAGCGTGGGAAAGAATGAAGTGTCTGATACAAC\n+AGGTAACCTTAAGGAGTGGCGGCAAAGCTCTTGATTGATCAACGCGAGTGAACTGTGCTTAGACGCTTCG\n+TAAAACCGCACCGATCTACGAGAGGAGCTGATGGATGAGTAGGCTTCCCCTTTCGATTTACGGAATGTGA\n+TCTGGGACACGATGGGGGTTTGCGTGCCTCGGTAGGAAAGAGATCACCGGAGTATAGCACAAGATCGCCT\n+TTTTTTTTCTTGCTGCCATGGGGTCGACCTGTCAACAAGGTAAACCCAATGGGAACCAAAAACGGGAGGG\n+TACCACATTGATTGACATTGGGCAGAAGACGATCCAAAAAGCGAAGGCTCACCCAGCTTAGATCGGCAGT\n+GAGGGATGCTTACCTTCTTCTTAGAGAAAGGGGCAACCTATCTTACTAATAATAAAGGGGGTGGCATCGA\n+CTGGGGTTTTACACCCAGTTGGTGTAAGGGATGAATCACACTTTGCGGTCGGATTGCCAGAAATGGTGCC\n+GACTGTCCATGAGGCGAACAATCGGTAGCGAGATACAGATCCGGAGAGATCTGGGTCTTCTATCTCAACA\n+TTTGGTTGTTTAACCTCACTCCACGACACATGGAGTCCTATTTGTTTGGTTTGGTTAACTAGGTGCCCCC\n+CCACGACTGATGCGACATTCAGTCGTTTAGGCGAGTTTTGGTGTTTATTAAGATAAACCAGTTTGTCAAA\n+TGAATCCGGTTGGATTCGCAAATGTCTTATACTTGAGTATTTACATTGGAGGGCGGTGATCTGGAAGCCA\n+TCCCAGTGGAGGTTAGTCCAATGACTGACTTCTGCATCAGGTACCCCGGATAAGGAAAGACATGAAAATT\n+AATTTTTCCAGGTATTTGTTTGACAAACTGTTGTCTCTTAAGACCATCAAATGGCACAATATTTTGTAAA\n+ATCTTATTAGTATTATAGATACTAATAATAGCTACCGACGGTCTGACCAAGGAACTCTGTATAGGAGCAT\n+ACCTCGTAGCCAGGTAATTCAGTGAAACCGACGATCTGGCCCTCTGTTTACTGCTTTCTATCTAAAACAA\n+GCAGCTACTTGCTGTAAGCAAGCGTATGCAGGGGTCAGTCAGTCGCACAGTTTATTACCTGTGGCCAGTG\n+TCTCTGACGACCCTCAGATTATACCTTCCTTCCATCGCAAAATGATTCTGAAGAAGGATCAGAAGGCCGA\n+CTTATGGGTTCATATATATATGTCTTTAGTCTTTGTCGGGCTATTCGCCTGGCGAAACGGATTGACAGAT\n+CGATATTGAAATCGATAGTCACCCCTTCCACCGGTCTGCCAAGACAGTCTCAATTAAAAAATGAGATTGT\n+CGCTTTATCTAAAGACCTGATCCTGAGGTACTGTCCTAGTTTTCTCTCAACTCCCTTGTGTCAGGGGGTA\n+CGTTGGGAGCCAACTTGGAAAGCGAGACCTTAGTGGAGGCCGTAAAGGTGAAAAGACGCGTGGAGGAATA\n+TTCTACCCTACCATCTGCGTCATGAAATCGTTTGGTTTGTACATCAATAGCCATTGTGACTATGATGCAG\n+GGTTTCCTCTATGGTCCCCCTTTATCCGATACCCTTATGACCAAAAGAATTCAGAGATATCTCCATGGTC\n+TACAGAGACCGCTGAGAGTACCATCCACTCTCTTTCGGGTCTAGACACTTCGGTGAGTCTATTGACTCAG\n+GCTCCCCTGGTAGACTATCGCAATCTACCGAGGCTGGCGCTGGTAAGAGACAGATATTCGCCATAGGTAA\n+CTTTGTGAATCAAAGGGTCTTGAAGCCTCTTCATGATTTCCTCATGGACACGCTTCGGTCTATCCCAATG\n+GATGGAACTTTGAATAAGCTCCGACCGTTCGTTGGATAGATGAAAAGGTTTCAGTAAGGTTTATTCTTTT\n+GACTTGAAGTCTGCCACCGATAGGTGGCCCCTCAGTCTGAAGACTAACCACCTTATTAGAACTTTATTTG\n+GTGGTCAGTCTGTTGGAGATTGTTTAGATGCAATCTTCAGCAGATCTATGAAGTACCCTTTCTTCGCTCA\n+GTTCGAGGTGTCGTATTCTTTAGAGTAGGACAACCTCTTGGCTTTCTGTCTTCTTGGCCTCTCTTCACTT\n+TAACACATCACTTAGTGATGTTTTATTGTGAAGAGAAGGTGTACCCAGGACAGCGCTTGACTAGGTATGC\n+CATTCTTGGAGACGATGTTTGTATCGCCGACGAGAATGTGGCCTCTCTTTATCGCCAGACAGTAAATGAT\n+CTAGGTCTCGCAATAAGAAGGGGGGTGAGATAGGCGACAGGTAGCTTGCTTCCAAGCCGGCCCGGCCGCG\n+AGGAAGAGATCTTTGCCGGTGCTGACTTGGATCTCGGGTGACGGAAGAAGGCGCCCAGAAGCGACGAGCA\n+GTCGCGGTCGAAGCTTGGCTCTAGGCGATAGGCTAGCAGTAAGCTTGGCTACAGCGAAGCGCTTACCAAG\n+CGCGAAGGATTCGTTCCTCTCCCAGCAAGAGGATGCGCGCCTTAACGTAAAAGAGCTAACGCGCTTGACT\n+TTACCAAGGCTTTGGGCTCGTTAGCGGGTCGAGCTCAAACCTTAGCCACTTGAGCCGTATGCGGGGGAAC\n+TCGCACGTGCGGTTCTTAGGGGGGAGAGCTAGTAGGAACCATCCTATCCCAATAGCGAATATTTGGAGCT\n+CAATATGAAATCCTATTTTCTTGCAAGACCCGTTCGGATAAGGGAAAACTCCAGAGATTGCTTCGAAGTA\n+AGATCCTTGCGTTGACCCTTTCCTGAACCAGAACCGGGGGGGAGGGGTTGAGAGGAAAGAAAAGGGGATC\n+CAAATTGACCATCAATCAATAAAGTGAGGGCTTTCCGGACCTTCCCCACCCCTCTTTCCATTCTTCCTTC\n+CCCTCTCACCCCCCCTTTTTCAAGAAAGAAGCCCCGCTCCCTAAGAAGGGGCCCCTCTCTGATAAGGAAG\n+GAAACGAAAGAATCTCCATTTT\n' |
| b |
| diff -r 000000000000 -r f4394bbdf433 test-data/0.0.1.minima/SeedDatabase/embplant_pt.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/0.0.1.minima/SeedDatabase/embplant_pt.fasta Mon Aug 22 09:59:03 2022 +0000 |
| b |
| b'@@ -0,0 +1,2 @@\n+>MF536700.1_Cucumis_melo_var._makuwa_isolate_M1-15_chloroplast__complete_genome\n+ATTTCTCGTATGAGTTATATATTATATAACTATATAATTAATATTATGGGCGAACGACGGGAATTGAACCCGCGCATGGTGGATTCACAATCCACTGCCTTGATCCACTTGGCTACATCCGCCCCCTACCCTATATATATATATAAGTAGAAATTATAAACAAAAGTTATGTAAATTTTATTAATAAAAAAGGAGCAATACCAATCCTCTTGAGAAAACAAGAAATTGGTTATTGCTCCTTTACTTTCAAGAACTCGTATACACTAAGACAGAAGTCTTATCCATTGATAGATGGAACTTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCTCGACCCATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCGTTGTATAACCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAAAAGTGCAAACCGATAGCTGCAGAAGTAGGGATAATAGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAAACGACCCCATAGGCTTTCGCTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAAATCTTGGTTTATTTAATCATTAATCATCAGGGACTCCCAAGCACATGAATTCTCTAGAAATAGAAAATGAAGGGCTTGTTATTCAACAGTATAACATGACTTATATACCCATGTCAACCAATATAAACATCCATAAATATATATCTATGCTTTTATTAGTTATCTAGATTAATCTTTCTTTTTTTTTATTTAATTCTTTTCATTCATTAAAAAATATAATTAGACTTGATAGATTATTTTGATATGATAAATTAGTTCACTATCATCATTAATATGGGTTGCCCGGGACTCGAACCCGGAACTAGTCGGATGGAGTCGATAATTTACTTAAAAAAAATAAGTAAAAAAAATCCCTCCCCAAACCGTGCTTGCATTTTTCATTGCACACGGCTTTACCTATGTATACATATAAAACGCAGTTACTTCCCTAGGCAGGATTCTCACTAAGAAAGTGGAATATTCTGTTGATCAACTCTTACCAAATGAACATTTCATAATAGAAATTAATGAATTTTTTTGGTATCTCTTGAGGATTTATTAAGTAAAATTCTCATTTACATGGTCTCATAACCAATCATTCATGATTGGCCAAATCATTCATGCAAATAATATCCAAATACCAAATTTTCCCCCTATATACCCTCCGTAAAGTAAAAGAAGCTCTTGGGAAGATCAAAGAAAGAACCTGTTCTTGCTCCGTAAAGAATTCTTCCAATAATTCCGAATTTAACCTTTTAAAAAGAGCACGTACAGTACTTTTGTGTTTACGAGCCAAAGTTTTAACACAAGAAAGGCGAAGTATATATTGGATTCGATACAAATTCTTTTTTTTTGAGGATCCTCTGTAATAATGAGAAAGATTTCTGGATATACGCAAAAATCGATCAATAATATCAAAATCCGACGAATCGATCCAGTTCGGCTTACTAATGGGATGTCCTAAGACGTTACAAAATTTCGCTTTAGCCAATGATCCAAGCAGAGTAATAATAGGAACTAGTGTATCGAGTTTCTTGGTAGCATTATCTATTAGAAATGAATTTTCTAACATCTGAGTCCATACCACTGAAGTATTTAATCGAACACTTGAAATATAGCCCAAAAAGTCAAGAGAACGCTTGGATAATTGGTTTATATAGATCCTTTCTGGTTGTGACCACACATAAAAATGACATTGCCATAAATTGACAAAGTAATATTTCCACTTATTAATCAGAAGTGGCGTATCTTTTGAAACCAGAATAGATTTTGCTTGATATCTAACATAATGTATCAAAGGATCCTTGAAGATCCGTAAGATAGCCGAAAAATAATTAGCAAACACTTTGACAAGATGTTCGATTTTTCCATAGAAATATATTCGCTCAAAAAAGCCCCTATAAGAAGTTAATCGTATATGAGAAGATTGGTTACGTAGAAAAAGGAAAATGGATTCGTATTCACATACATAAGAATTGTATAGGAACAAGACTAATCTTCGATTTCTTTTTGAAAAAAAAGAAATCAATTTTTTTGAAGTACTAAGACTATTCAAATTACAATACTCGTGAAAAAAGAACCGTAATAAATGAAAAGAAGAGGCATCTTTCACCCAGGAGCGAAGGATTTGAACTAAAATTTCCAGATGGAGGGGATAGGGTATTAATACATCTGACACATAATTTAAATGTGGGAATTTATCCTCTAAAAAAGGAAATATTGAATGACTTGATCGTAAATTATAAGATTTTGCGATTTCTTCTTCTTTTAAGGAAGATACTAATCGTAGGGAAAATGGAATTTCCACAATGACTGCAAACCCTTCTGATAACATTTGAGAATACAAATTGTTATTGTACCCACAAAAAGGATTTTTGTTATAATAATTAGTCGACAAAAAAAAAAAATGATTCTGGTGATACATTCGAGTAATTAAATGTTTTACCATTAGTAAACTGGATTTTTTGTCATAACCAGAATTTTCCAACAAAATGGATCCATTTAAAAAATGATCATGAGAAAATGCGTAAATATACTCCCGAAAGATAAGTGGGTATAGGAAGTCACGTTGCCGAGATTTCTCAAGTTCTAAATATCCTTTAAATTCCTCCATTTAAAATTTGATTTGAACTGGGGATACGATAATGGGATTTATTGGGTTATCAAATGATACATAGTGCGATACAGTCAAAACAAGGTATTACAGTAAAATAAAGAATAATAATAGATACCTCGTAAATAGGTAAGACTTATCAACGGACTCTCTATCCTCTCTTTTCTTTTGTCATCTAATTGGTTTCTATTTTAGGATAAAAAAGATGGTTAGAAATCCTTTATTTTTTCAACCCAATCGCTCTTTTGATTTTGGAAAAAAACTCTTTATCAATATACTGCTTCTTCTACACATTCCCCTCTACCTCATAACGTAGAGTAACTAATAGTTAGGACTTAGAAAAAAATGGATAACTCACTCATAAGAAAAGTCCTTCCCGCATCAAGCACTAATATAGTTTTAACGTCTAATTAGATCGGCGAATCATTCAAATTAAGAACATAAGCCCGTTACTTTTTATTTCT'..b'CTCTCTTCTGATTCAAAATCGTGGTGTAACGTGTATCCCCTCCTGTTCCGGTCATGGAATAGATGAAATAAATAAATAAATGGATTTTTGTTCAAGAATGAAATCTTATTGGAACTGTCCATATCCAGTTCATCCTTCGGAACCATATCACATCCCGGATCTGATGAAATAGGATGAATTGAGACGGTATTTTGTAAATACGTAATTATCTTGAATATATTAACTATTTCTTTATTTTCCGATCGACTGGAAGGGACAAAAGAAACATCTTGTTCTTTCTTCAACAATTTCTGATCTCTAGTGGACCTCTGAATAGGATTCGAACCCATATGAAGTTCTGACCATCTGTCAGAGAAAAAAGAACGAATGGATCTTGTAGGATTCCCGAGAAATTCTTCGATTTCTTCCGGAAGCGGATGATTATTCATCTGCTTCTCACGTTCCGTGAATAGCCGGGACATTGAGGAATATCCAGAAAAGCATTTAGGGAATCGGTCTGATTCTATCTCTGTTCGTTCCGTTTGAAGAAAGGAAGGATCCCAAAGAATCGATCTTTCTTTTAGTTGTTGAATCTCTCTTTGATTGATCAATGTGTGATATTCCGAATCCTCATTACTAATGGAATCGAAATGATCTCTGGATTGATCAGAAGATCCTTTCAATTGGCTAGAATCCGTTACTTGAACGAAACTAGATCTTGTGGAATCATATTGAATATTTGACAAGACATTCCGTACCTTGCTAAAAAACCGATCCTTGTTTACCAACCACACATTGTCTAACCAAATCCAATTCTCTCTCGATATGTTCCTCAAAAAATCCGATTCGTGCGGATTCTTCCCCCAACTAAAGAAGAGATCTTGGCGGAATTGCCACATATGAAATTGAGCACAATTTTGCAAAGAAATAGCCCACTTGTTTCTCGAGAAGAGATGGGAAACATGCTCAATATCATTTGATTGAATAGTTGACCCAGCTCCTTGTTGTTTGAAGAAGCCCTCCACTTCAATTGGTATTTTTTCACGAAAAGCAAACATGAGATAACAAATCCAGTCTTTCACTAAGATTTCGAATAGCTGTCCCGAATTCAAGTTGATTATGTTTTGCCTCTTCCTCGTAAAAGGACGATCCAACAATTCCCAATCATGGTCCTTGCGGATCTGATCATCCATATAATATACAAAAAGAAACTCCAGATATTTGATATCTTTCTCTTTGAATGAGATCTCAATTCCAGCGACGGTTTCATTAGATATCTTACAACTGGAATCCCTCTTTTTTCCGATCCAGTTCCTCCACCACCGCGAACCCCAGTCAGATTCAGGCATGATACACTTTTTAGTTATTGGGAGAACCCAAGTACTCTCTTTCGGATCCAGGAAACAGCTCTCAGAGATCTTTTTTCCTTTTGGAAGATACAGGAGCGAAACAATCAACCTATTGATATTGGAAGAGCCAAAAGATTCTTCCAATGTATCATTTCTGGGTCCAATGAAATTCATAGGTATAGGAAGAAACCCTGTCAAATAGAGATTTTTTCTTTCGACCATCTTTCGATTGTTAATACGATATATAAGGACCGCTACTACAAATAGTACTACACCCTTGATCGTGAAATATCGATTCCTTGTTGAACCCTGTGAATTGCGTGAAAGTAGGATACTCCAAATTCGGGAGTCTAAGAGTTTTATAAAACGTTCTTGATGGCAAAAAATGTGAATGAAAGATCCCAATGAATTGAATTGGTTCCATGAATCTAAGAAATAATGAGAATTCTTGATCTCTCTTAATTCGAAAATCCAGGATTTGAATTGCTGCTCTTTCATTTCAGTCCTCCTAAATTGCATTGATTTATCCTAAAGTTTTCATTTCAATTGGAATTTGCACCATGTAGCAGGATCCCCGCTAAGCATCCATGGCTGAATGGTTAAAGCGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCACGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCGATGGAATCTCATCAGCCATACATAACGAATTGATGTGGTATATTCATATCATAACATATGAACAGTAAGAACTGGCATTCTTATACAGACTCGAACTCATAGGGAAGAAAATTTATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATAGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCTCCACAGGATAGACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGTCCCTTGTTTCAAAGAGAGGAGGACGGGTTATTCACATTTCATTTGATGGTCAGAGGCAAATTGAAAGCTAAGCAGTGGTAATTCTAAGGATTCCCGAGGGGAAAAATAGAGATGTCTCCTACGTTACCCGTAATATGTGGAAGTATCGACGTAATTTCATAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGAAGGAACGGGAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTCGGCAGATTTGGATTCCTATATATCCACTCATGTGGTACTTCATTGTACCATATATATAAGATCCATATGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAAGAGAGAAAATCTAATTTGTTTCTTCGTCTTTACAAAAAAAAAAAATAGGAGGTAAATTCACTGT\n' |
| b |
| diff -r 000000000000 -r f4394bbdf433 test-data/Arabidopsis_simulated.10k.1.fq.gz |
| b |
| Binary file test-data/Arabidopsis_simulated.10k.1.fq.gz has changed |
| b |
| diff -r 000000000000 -r f4394bbdf433 test-data/Arabidopsis_simulated.10k.2.fq.gz |
| b |
| Binary file test-data/Arabidopsis_simulated.10k.2.fq.gz has changed |
| b |
| diff -r 000000000000 -r f4394bbdf433 test-data/getorganelle.loc --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/getorganelle.loc Mon Aug 22 09:59:03 2022 +0000 |
| b |
| @@ -0,0 +1,1 @@ +getorganelle_refdata getorganelle seed and label data ${__HERE__}/0.0.1.minima/ 0.0.1 |
| b |
| diff -r 000000000000 -r f4394bbdf433 tool-data/getorganelle.loc.sample --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/getorganelle.loc.sample Mon Aug 22 09:59:03 2022 +0000 |
| b |
| @@ -0,0 +1,1 @@ +#ID name path version |
| b |
| diff -r 000000000000 -r f4394bbdf433 tool_data_table_conf.xml.sample --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Mon Aug 22 09:59:03 2022 +0000 |
| b |
| @@ -0,0 +1,8 @@ +<?xml version="1.0"?> +<tables> + <!-- Location of seed and label data for getorganelle --> + <table name="getorganelle" comment_char="#"> + <columns>value, name, path, db-version</columns> + <file path="tool-data/getorganelle.loc" /> + </table> +</tables> |
| b |
| diff -r 000000000000 -r f4394bbdf433 tool_data_table_conf.xml.test --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.test Mon Aug 22 09:59:03 2022 +0000 |
| b |
| @@ -0,0 +1,7 @@ +<tables> + <!-- Location of seed and label data for getorganelle test --> + <table name="getorganelle" comment_char="#"> + <columns>value, name, path, db-version</columns> + <file path="${__HERE__}/test-data/getorganelle.loc" /> + </table> +</tables> |