| Previous changeset 0:12d69a5e4303 (2016-05-12) |
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Commit message:
Uploaded |
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added:
append_gene_name.xml |
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| diff -r 12d69a5e4303 -r f4e563843692 append_gene_name.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/append_gene_name.xml Thu May 12 21:48:06 2016 -0400 |
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| @@ -0,0 +1,36 @@ +<tool id="ensid_gene_append" name="EnsID Gene Name append" version="1.0"> + <description>Appends the Gene name to a gene table with the matching EnsID</description> + <command interpreter="python"> + append_gene_name.py -t ${ensid_to_gene} -g ${gene_expression_file} + </command> + <inputs> + <param name="ensid_to_gene" type="data" optional="false" format="text" label="EnsID to Gene Name Table" help="The file that contains the EnsID is one column and the matching Gene Name in the next."> + </param> + + <param name="gene_expression_file" type="data" optional="false" format="text" label="Gene Expression table with EnsGeneIDs" help="The tabular file with the Gene Expression values."> + </param> + </inputs> + <outputs> + <data format="tabular" label="EnsGeneID table with Gene Names." name="" from_work_dir="table.txt" /> + </outputs> + <tests> + </tests> + <help> + + +.. class:: infomark + +Takes in a file with gene expression data and a file that has a mapping of EnsGene IDs to gene names and adds the real gene name to the row with the matching EnsID. + + +------ + +.. class:: infomark + +**Tool Author** + +Mando Rodriguez + </help> +</tool> + + |