| Previous changeset 0:a38447a59412 (2017-02-17) Next changeset 2:39d9bc17ec74 (2017-02-17) |
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Commit message:
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit ca94ae0d3a25a511f7d2c98712efc37b332642e7-dirty |
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modified:
allow_dovetailing.xml bam_readtagger.xml deploy.sh |
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| diff -r a38447a59412 -r f69131f584e8 allow_dovetailing.xml --- a/allow_dovetailing.xml Fri Feb 17 10:54:47 2017 -0500 +++ b/allow_dovetailing.xml Fri Feb 17 12:25:01 2017 -0500 |
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| @@ -1,7 +1,7 @@ -<tool id="allow_dovetailing" name="Allow dovetailing" version="0.1.8"> +<tool id="allow_dovetailing" name="Allow dovetailing" version="0.1.10"> <description>modifies proper_pair flag in bam files</description> <requirements> - <requirement type="package" version="0.1.8">readtagger</requirement> + <requirement type="package" version="0.1.10">readtagger</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ allow_dovetailing -i '$input' -o '$output' |
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| diff -r a38447a59412 -r f69131f584e8 bam_readtagger.xml --- a/bam_readtagger.xml Fri Feb 17 10:54:47 2017 -0500 +++ b/bam_readtagger.xml Fri Feb 17 12:25:01 2017 -0500 |
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| @@ -1,10 +1,10 @@ -<tool id="bam_readtagger" name="Tag alignment files" version="0.1.8"> +<tool id="bam_readtagger" name="Tag alignment files" version="0.1.10"> <description>from multiple bam files</description> <macros> <import>macros.xml</import> </macros> <requirements> - <requirement type="package" version="0.1.8">readtagger</requirement> + <requirement type="package" version="0.1.10">readtagger</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ readtagger -t '$tag_file' -a |
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| diff -r a38447a59412 -r f69131f584e8 deploy.sh --- a/deploy.sh Fri Feb 17 10:54:47 2017 -0500 +++ b/deploy.sh Fri Feb 17 12:25:01 2017 -0500 |
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| @@ -4,6 +4,9 @@ CURRENT_DIR=$(dirname $0) +echo "Installing planemo ... again" +pip install planemo + echo "Deploying to Testtoolshed ..." planemo shed_update -r --force_repository_creation -t testtoolshed --shed_key_from_env TTS_KEY "$CURRENT_DIR" |