Repository 'package_python_2_7_pyvcf_0_6_7'
hg clone https://toolshed.g2.bx.psu.edu/repos/ulfschaefer/package_python_2_7_pyvcf_0_6_7

Changeset 0:f6d05f9a22bf (2015-12-11)
Next changeset 1:ed025c662e59 (2015-12-18)
Commit message:
Uploaded
added:
tool_dependencies.xml
b
diff -r 000000000000 -r f6d05f9a22bf tool_dependencies.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml Fri Dec 11 09:34:42 2015 -0500
b
@@ -0,0 +1,28 @@
+<?xml version='1.0' encoding='utf-8'?>
+<tool_dependency>
+    <package name="python" version="2.7.10">
+        <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+ <package name="pyvcf" version="0.6.7">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://pypi.python.org/packages/source/P/PyVCF/PyVCF-0.6.7.tar.gz</action>
+                <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="shell_command">
+                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
+                    python setup.py install --install-lib $INSTALL_DIR/lib/python
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable action="set_to" name="PYTHONPATH_PYVCF">$INSTALL_DIR/lib/python</environment_variable>
+                </action>
+            </actions>
+        </install>
+            <readme>
+            This Galaxy Tool shed package installs pyvcf(https://pypi.python.org/pypi/PyVCF)
+            package for use with python 2.7.10.
+
+            The corresponding PYTHONPATH is accessible via PYTHONPATH_PYVCF
+        </readme>
+ </package>
+</tool_dependency>