Repository 'cpt_intersect_adj'
hg clone https://toolshed.g2.bx.psu.edu/repos/cpt/cpt_intersect_adj

Changeset 1:f7d19040fafa (2024-08-11)
Previous changeset 0:923d2528480d (2024-08-08) Next changeset 2:0dbc7fbad0ab (2024-08-12)
Commit message:
planemo upload commit 79bba3858aa6c0b5cc271fe69c485830acd428e2
modified:
intersect_and_adjacent.xml
b
diff -r 923d2528480d -r f7d19040fafa intersect_and_adjacent.xml
--- a/intersect_and_adjacent.xml Thu Aug 08 04:14:38 2024 +0000
+++ b/intersect_and_adjacent.xml Sun Aug 11 22:22:44 2024 +0000
[
@@ -3,18 +3,20 @@
   <macros>
     <import>macros.xml</import>
   </macros>
+  <expand macro="requirements"/>
   <requirements>
     <requirement type="package" version="3.0.2">intervaltree</requirement>
   </requirements>
   <command detect_errors="aggressive"><![CDATA[
-python '$__tool_directory__/intersect_and_adjacent.py'
-'$gff3_data_a'
-'$gff3_data_b'
-'$window'
-'$stranding'
---oa '$oa'
---ob '$ob'
-]]></command>
+    python '$__tool_directory__/intersect_and_adjacent.py'
+    '$gff3_data_a'
+    '$gff3_data_b'
+    '$window'
+    '$stranding'
+    --oa '$oa'
+    --ob '$ob'
+    ]]>
+  </command>
   <inputs>
     <param label="GFF3 Annotations A" name="gff3_data_a" type="data" format="gff3"/>
     <param label="GFF3 Annotations B" name="gff3_data_b" type="data" format="gff3"/>