| Next changeset 1:bd20187f16c5 (2018-08-14) |
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Commit message:
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty |
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added:
Galaxy-Workflow-Haplotype_analysis.ga repository_dependencies.xml |
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| diff -r 000000000000 -r f81b8b6a97fb Galaxy-Workflow-Haplotype_analysis.ga --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Galaxy-Workflow-Haplotype_analysis.ga Tue Aug 14 08:32:12 2018 -0400 |
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| b'@@ -0,0 +1,252 @@\n+{\n+ "a_galaxy_workflow": "true", \n+ "annotation": "", \n+ "format-version": "0.1", \n+ "name": "Haplotype_analysis", \n+ "steps": {\n+ "0": {\n+ "annotation": "", \n+ "content_id": "testtoolshed.g2.bx.psu.edu/repos/vmarcon/vcftools_filter_stats_diversity/sniplay_vcftoolsfilter/2.0.0", \n+ "errors": null, \n+ "id": 0, \n+ "input_connections": {}, \n+ "inputs": [\n+ {\n+ "description": "runtime parameter for tool VCFtools Filter", \n+ "name": "input"\n+ }\n+ ], \n+ "label": null, \n+ "name": "VCFtools Filter", \n+ "outputs": [\n+ {\n+ "name": "fileout", \n+ "type": "vcf"\n+ }, \n+ {\n+ "name": "fileout_map", \n+ "type": "tabular"\n+ }, \n+ {\n+ "name": "filelog", \n+ "type": "txt"\n+ }\n+ ], \n+ "position": {\n+ "left": 121.5, \n+ "top": 247\n+ }, \n+ "post_job_actions": {}, \n+ "tool_id": "testtoolshed.g2.bx.psu.edu/repos/vmarcon/vcftools_filter_stats_diversity/sniplay_vcftoolsfilter/2.0.0", \n+ "tool_shed_repository": {\n+ "changeset_revision": null, \n+ "name": "vcftools_filter_stats_diversity", \n+ "owner": "vmarcon", \n+ "tool_shed": "testtoolshed.g2.bx.psu.edu"\n+ }, \n+ "tool_state": "{\\"nb_alleles_min\\": \\"\\\\\\"2\\\\\\"\\", \\"chromosomes\\": \\"\\\\\\"3\\\\\\"\\", \\"__page__\\": null, \\"nb_alleles_max\\": \\"\\\\\\"4\\\\\\"\\", \\"type_p\\": \\"\\\\\\"ALL\\\\\\"\\", \\"allow_missing\\": \\"\\\\\\"1.0\\\\\\"\\", \\"fileout_label\\": \\"\\\\\\"filtered\\\\\\"\\", \\"frequency\\": \\"\\\\\\"0.001\\\\\\"\\", \\"export\\": \\"\\\\\\"VCF\\\\\\"\\", \\"samples\\": \\"\\\\\\"\\\\\\"\\", \\"bound_end\\": \\"\\\\\\"100000000\\\\\\"\\", \\"input\\": \\"{\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}\\", \\"max_freq\\": \\"\\\\\\"0.5\\\\\\"\\", \\"__rerun_remap_job_id__\\": null, \\"bound_start\\": \\"\\\\\\"1\\\\\\"\\"}", \n+ "tool_version": "2.0.0", \n+ "type": "tool", \n+ "uuid": "4a63fe7d-03bf-4f8a-b744-acc6c333fd56", \n+ "workflow_outputs": []\n+ }, \n+ "1": {\n+ "annotation": "", \n+ "content_id": "testtoolshed.g2.bx.psu.edu/repos/vmarcon/beagle/Beagle/1.0.0", \n+ "errors": null, \n+ "id": 1, \n+ "input_connections": {\n+ "vcf_input": {\n+ "id": 0, \n+ "output_name": "fileout"\n+ }\n+ }, \n+ "inputs": [\n+ {\n+ "description": "runtime parameter for tool Beagle", \n+ "name": "vcf_input"\n+ }\n+ ], \n+ "label": null, \n+ "name": "Beagle", \n+ "outputs": [\n+ {\n+ "name": "vcf_ouput", \n+ "type": "vcf"\n+ }, \n+ {\n+ "name": "log", \n+ "type": "txt"\n+ }\n+ ], \n+ "position": {\n+ "left": 343.5, \n+ "top": 355\n+ }, \n+ "post_job_actions": {}, \n+ "tool_id": "testtoolshed.g2.bx.psu.edu/repos/vmarcon/beagle/Beagle/1.0.0", \n+ "tool_shed_repository": {\n+ "changeset_revision": null, \n+ "name": "beagle", \n+ "owner": "vmarcon", \n+ "tool_shed": "testtoolshed.g2.bx.psu.edu"\n+ }, \n+ "tool_state": "{\\"phase\\": \\"\\\\\\"5\\\\\\"\\", \\"__page__\\": null, \\"__rerun_remap_job_id__\\": null, \\"impute\\": \\"\\\\\\"5\\\\\\"\\", \\"vcf_input\\": \\"{\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}\\"}", \n+ "tool_version": "1.0.0", \n+ "type": "tool", \n+ '..b'"{\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}\\", \\"__rerun_remap_job_id__\\": null, \\"__page__\\": null}", \n+ "tool_version": "2.0.0", \n+ "type": "tool", \n+ "uuid": "4bfbaba7-3fc2-4076-82d6-3212c61fcb91", \n+ "workflow_outputs": []\n+ }, \n+ "3": {\n+ "annotation": "", \n+ "content_id": "testtoolshed.g2.bx.psu.edu/repos/vmarcon/haplophyle/haplophyle/1.0.0", \n+ "errors": null, \n+ "id": 3, \n+ "input_connections": {\n+ "input": {\n+ "id": 2, \n+ "output_name": "output_distinct_fasta"\n+ }\n+ }, \n+ "inputs": [\n+ {\n+ "description": "runtime parameter for tool Haplophyle", \n+ "name": "input"\n+ }\n+ ], \n+ "label": null, \n+ "name": "Haplophyle", \n+ "outputs": [\n+ {\n+ "name": "fileout", \n+ "type": "json"\n+ }, \n+ {\n+ "name": "dotfile", \n+ "type": "txt"\n+ }, \n+ {\n+ "name": "filelog", \n+ "type": "txt"\n+ }\n+ ], \n+ "position": {\n+ "left": 856.5, \n+ "top": 377\n+ }, \n+ "post_job_actions": {}, \n+ "tool_id": "testtoolshed.g2.bx.psu.edu/repos/vmarcon/haplophyle/haplophyle/1.0.0", \n+ "tool_shed_repository": {\n+ "changeset_revision": null, \n+ "name": "haplophyle", \n+ "owner": "vmarcon", \n+ "tool_shed": "testtoolshed.g2.bx.psu.edu"\n+ }, \n+ "tool_state": "{\\"color\\": \\"{\\\\\\"__current_case__\\\\\\": 0, \\\\\\"choice\\\\\\": \\\\\\"false\\\\\\"}\\", \\"input\\": \\"{\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}\\", \\"__rerun_remap_job_id__\\": null, \\"__page__\\": null}", \n+ "tool_version": "1.0.0", \n+ "type": "tool", \n+ "uuid": "31d5583a-740b-46e2-80d8-02d0315ac954", \n+ "workflow_outputs": []\n+ }, \n+ "4": {\n+ "annotation": "", \n+ "content_id": "testtoolshed.g2.bx.psu.edu/repos/vmarcon/cytoscape/Cytoscape/1.0.0", \n+ "errors": null, \n+ "id": 4, \n+ "input_connections": {\n+ "input": {\n+ "id": 3, \n+ "output_name": "fileout"\n+ }\n+ }, \n+ "inputs": [\n+ {\n+ "description": "runtime parameter for tool Cytoscape", \n+ "name": "input"\n+ }\n+ ], \n+ "label": null, \n+ "name": "Cytoscape", \n+ "outputs": [\n+ {\n+ "name": "cytoscape_html", \n+ "type": "html"\n+ }, \n+ {\n+ "name": "filelog", \n+ "type": "txt"\n+ }\n+ ], \n+ "position": {\n+ "left": 1089, \n+ "top": 270\n+ }, \n+ "post_job_actions": {}, \n+ "tool_id": "testtoolshed.g2.bx.psu.edu/repos/vmarcon/cytoscape/Cytoscape/1.0.0", \n+ "tool_shed_repository": {\n+ "changeset_revision": null, \n+ "name": "cytoscape", \n+ "owner": "vmarcon", \n+ "tool_shed": "testtoolshed.g2.bx.psu.edu"\n+ }, \n+ "tool_state": "{\\"input\\": \\"{\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}\\", \\"__rerun_remap_job_id__\\": null, \\"__page__\\": null}", \n+ "tool_version": "1.0.0", \n+ "type": "tool", \n+ "uuid": "8e3d9a5c-09a2-4ef1-acd5-07ca5bb43484", \n+ "workflow_outputs": []\n+ }\n+ }, \n+ "tags": [], \n+ "uuid": "2ce7df85-4151-40cc-b636-a135663b90ee"\n+}\n' |
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| diff -r 000000000000 -r f81b8b6a97fb repository_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/repository_dependencies.xml Tue Aug 14 08:32:12 2018 -0400 |
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| @@ -0,0 +1,8 @@ +<?xml version="1.0" encoding="UTF-8"?> +<repositories description="Haplotype analysis workflow"> + <repository changeset_revision="aad8f697f86b" name="vcftools_filter_stats_diversity" owner="dereeper" toolshed="http://toolshed.g2.bx.psu.edu"/> + <repository changeset_revision="a929ef8dea25" name="beagle" owner="dereeper" toolshed="http://toolshed.g2.bx.psu.edu"/> + <repository changeset_revision="88748d846a20" name="sniplay" owner="dereeper" toolshed="http://toolshed.g2.bx.psu.edu"/> + <repository changeset_revision="6f11162b6fa2" name="haplophyle" owner="dereeper" toolshed="http://toolshed.g2.bx.psu.edu"/> + <repository changeset_revision="e3beb33f88f0" name="cytoscape" owner="dereeper" toolshed="http://toolshed.g2.bx.psu.edu"/> +</repositories> |