| Previous changeset 0:b8590dea5e2d (2021-07-18) Next changeset 2:9ac2e8232c5c (2022-08-05) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmstatistics commit 28244fe226c9bd5326886bf21960cbb43a4be2ec" |
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modified:
proteomiqon_psmstatistics.xml test-data/result_1.json test-data/result_2.json |
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| diff -r b8590dea5e2d -r f831f7d721f8 proteomiqon_psmstatistics.xml --- a/proteomiqon_psmstatistics.xml Sun Jul 18 13:53:08 2021 +0000 +++ b/proteomiqon_psmstatistics.xml Fri Aug 27 07:28:43 2021 +0000 |
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| @@ -3,7 +3,7 @@ utilizes semi supervised machine learning techniques to integrate search engine scores as well as the mentioned quality scores into one single consensus score. </description> <macros> - <token name="@VERSION@">0.0.6</token> + <token name="@VERSION@">0.0.7</token> </macros> <requirements> <requirement type="package" version="@VERSION@">proteomiqon-psmstatistics</requirement> @@ -35,7 +35,7 @@ "MaxIterations" : $ThresholdCond.MaxIterations, "MinimumIncreaseBetweenIterations" : $ThresholdCond.MinimumIncreaseBetweenIterations, "PepValueFittingMethod" : { - "Case":"$ThresholdCond.PepValueFittingMethod" + "Case":"LinearLogit" } } ] @@ -69,10 +69,6 @@ <param name="PepValueThreshold" type="float" value="0.05" label="Pep-Value threshold" /> <param name="MaxIterations" type="integer" value="15" label="Max iterations" /> <param name="MinimumIncreaseBetweenIterations" type="float" value="0.005" label="Minimum increase between iterations" /> - <param name="PepValueFittingMethod" type="select" label="Pep-Value fitting method"> - <option value="LinearSpline">Linear Spline</option> - <option value="LogisticRegressionLogit" selected="true">Logistic Regression Logit</option> - </param> </when> <when value="Fixed"> <param name="SequestLike" type="float" value="5.0" label="Sequest like" /> @@ -102,7 +98,6 @@ <param name="PepValueThreshold" value="0.05"/> <param name="MaxIterations" value="15"/> <param name="MinimumIncreaseBetweenIterations" value="0.005"/> - <param name="PepValueFittingMethod" value="LinearSpline"/> </conditional> </test> <test expect_num_outputs="2"> @@ -116,7 +111,6 @@ <param name="PepValueThreshold" value="0.05"/> <param name="MaxIterations" value="15"/> <param name="MinimumIncreaseBetweenIterations" value="0.005"/> - <param name="PepValueFittingMethod" value="LinearSpline"/> </conditional> <output name="out_paramfile" file="result_1.json"/> </test> @@ -131,7 +125,6 @@ <param name="PepValueThreshold" value="0.05"/> <param name="MaxIterations" value="15"/> <param name="MinimumIncreaseBetweenIterations" value="0.005"/> - <param name="PepValueFittingMethod" value="LogisticRegressionLogit"/> </conditional> <output name="out_paramfile" file="result_2.json"/> </test> |
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| diff -r b8590dea5e2d -r f831f7d721f8 test-data/result_1.json --- a/test-data/result_1.json Sun Jul 18 13:53:08 2021 +0000 +++ b/test-data/result_1.json Fri Aug 27 07:28:43 2021 +0000 |
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| @@ -12,7 +12,7 @@ "MaxIterations" : 15, "MinimumIncreaseBetweenIterations" : 0.005, "PepValueFittingMethod" : { - "Case":"LinearSpline" + "Case":"LinearLogit" } } ] |
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| diff -r b8590dea5e2d -r f831f7d721f8 test-data/result_2.json --- a/test-data/result_2.json Sun Jul 18 13:53:08 2021 +0000 +++ b/test-data/result_2.json Fri Aug 27 07:28:43 2021 +0000 |
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| @@ -12,7 +12,7 @@ "MaxIterations" : 15, "MinimumIncreaseBetweenIterations" : 0.005, "PepValueFittingMethod" : { - "Case":"LogisticRegressionLogit" + "Case":"LinearLogit" } } ] |