| Previous changeset 6:40bcc0e139fa (2024-10-30) Next changeset 8:61fb1a11e004 (2025-07-15) |
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Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit b1fccfb38b4873cd4699743033449014a2978e7d |
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modified:
qiime2_core__tools__export.xml |
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| diff -r 40bcc0e139fa -r f83fcc984626 qiime2_core__tools__export.xml --- a/qiime2_core__tools__export.xml Wed Oct 30 20:00:17 2024 +0000 +++ b/qiime2_core__tools__export.xml Mon May 05 19:06:10 2025 +0000 |
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| b'@@ -1,22 +1,22 @@\n <?xml version=\'1.0\' encoding=\'utf-8\'?>\n <!--\n-Copyright (c) 2024, QIIME 2 development team.\n+Copyright (c) 2025, QIIME 2 development team.\n \n Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)\n -->\n <!--\n This tool was automatically generated by:\n- q2galaxy (version: 2024.10.0)\n+ q2galaxy (version: 2025.4.0)\n for:\n- qiime2 (version: 2024.10.1)\n+ qiime2 (version: 2025.4.0)\n -->\n-<tool name="qiime2 tools export" id="qiime2_core__tools__export" version="2024.10.0+dist.h3d8a7e27" profile="22.05" license="BSD-3-Clause">\n+<tool name="qiime2 tools export" id="qiime2_core__tools__export" version="2025.4.0+dist.h1147124e" profile="22.05" license="BSD-3-Clause">\n <description>Export data from a QIIME 2 artifact</description>\n <xrefs>\n <xref type="bio.tools">qiime2</xref>\n </xrefs>\n <requirements>\n- <container type="docker">quay.io/qiime2/amplicon:2024.10</container>\n+ <container type="docker">quay.io/qiime2/amplicon:2025.4</container>\n </requirements>\n <command>q2galaxy run tools export \'$inputs\'</command>\n <configfiles>\n@@ -55,6 +55,7 @@\n <option value="EMPPairedEndSequences">EMPPairedEndSequences</option>\n <option value="EMPSingleEndSequences">EMPSingleEndSequences</option>\n <option value="ErrorCorrectionDetails">ErrorCorrectionDetails</option>\n+ <option value="FeatureData__ob__ANCOMBC2Output__cb__">FeatureData[ANCOMBC2Output]</option>\n <option value="FeatureData__ob__AlignedProteinSequence__cb__">FeatureData[AlignedProteinSequence]</option>\n <option value="FeatureData__ob__AlignedRNASequence__cb__">FeatureData[AlignedRNASequence]</option>\n <option value="FeatureData__ob__AlignedSequence__cb__">FeatureData[AlignedSequence]</option>\n@@ -263,6 +264,12 @@\n <option value="ErrorCorrectionDetailsFmt">Error Correction Details Format</option>\n </param>\n </when>\n+ <when value="FeatureData__ob__ANCOMBC2Output__cb__">\n+ <param name="output_format" type="select" label="QIIME 2 file format to convert to:">\n+ <option value="None" selected="true">export as is (no conversion)</option>\n+ <option value="ANCOMBC2OutputDirFmt">ANCOMBC2 Output Directory Format</option>\n+ </param>\n+ </when>\n <when value="FeatureData__ob__AlignedProteinSequence__cb__">\n <param name="output_format" type="select" label="QIIME 2 file format to convert to:">\n <option value="None" selected="true">export as is (no conversion)</option>\n@@ -855,9 +862,20 @@\n </inputs>\n <outputs>\n <collection name="exported" type="list" label="${tool.name} on ${on_string} as ${fmt_peek}">\n- <filter>fmt_finder[\'output_format\'] == \'None\' and fmt_peek not in {\'QIIME1DemuxFormat\', \'TSVTaxonomyFormat\', \'ProcrustesStatisticsDirFmt\', \'CasavaOneEightSingleLanePerSampleDirFmt\', \'UchimeStatsDirFmt\', \'SILVATaxidMapFormat\', \'NewickDirectoryFormat\', \'AlignedDNAFASTAFormat\', \'OrdinationDirectoryFormat\', \'TableJSONLFileFormat\', \'ProteinsDirectoryFormat\', \'AlignedProteinSequencesDirectoryFormat\', \'ArtificialGroupingDirectoryFormat\', \'QualityFilterStatsFmt\', \'ImmutableMetadataDirectoryFormat\', \'DistanceMatrixDirectoryFormat\', \'UchimeStatsFmt\', \'ProteinSingleProfileHmmDirectoryFmt\', \'DADA2StatsFormat\', \'BIOMV210DirFmt\', \'MultiFASTADirectoryFormat\', \'AlignedDNASequencesDirectoryFormat\', \'TableJSONLDirFmt\', \'SequenceCharacteristicsFormat\', \'BooleanSeriesFormat\', \'MultiBAMDirFmt\', \'GenomeSequencesDirectoryFormat\', \'AlignedRNASequencesDirectoryFormat\', \'MultiBowtie2IndexDirFmt\', \'ImportanceFormat\', \'FirstDifferencesDirectoryFormat\', \'ArtificialGroupingFormat\', \'MAGtoContigsFormat\', \'MAGSequencesDirFmt\', \'KaijuDBDirectoryFormat\', \'DiamondDatabaseFileFmt\', \'DataLoafPackageDirFmt\', \'QIIME1DemuxDirFm'..b'ialFormat\n - DNASequencesDirectoryFormat\n- - Kraken2OutputDirectoryFormat\n- - MultiBAMDirFmt\n- - FirstDifferencesFormat\n+ - DeblurStatsDirFmt\n+ - DADA2StatsFormat\n+ - Kraken2DBDirectoryFormat\n+ - Bowtie2IndexDirFmt\n+ - Kraken2DBReportDirectoryFormat\n+ - SeedOrthologDirFmt\n+ - QualityFilterStatsDirFmt\n - AlignedDNAFASTAFormat\n - ProcrustesStatisticsDirFmt\n- - EggnogProteinSequencesDirFmt\n- - DifferentialDirectoryFormat\n- - MAGSequencesDirFmt\n- - ProteinSingleProfileHmmDirectoryFmt\n- - ImportanceFormat\n+ - RNASingleProfileHmmDirectoryFmt\n+ - ContigSequencesDirFmt\n - ImmutableMetadataFormat\n- - ErrorCorrectionDetailsFmt\n- - ArtificialGroupingFormat\n- - OrthologAnnotationDirFmt\n- - DecontamScoreFormat\n- - FirstDifferencesDirectoryFormat\n- - TrueTargetsDirectoryFormat\n- - AlignedDNASequencesDirectoryFormat\n- - QualityFilterStatsFmt\n- - DeblurStatsFmt\n - BooleanSeriesDirectoryFormat\n- - BIOMV210DirFmt\n- - OrdinationFormat\n- - LSMatFormat\n- - ProteinMultipleProfileHmmDirectoryFmt\n- - ImportanceDirectoryFormat\n- - ImmutableMetadataDirectoryFormat\n- - ErrorCorrectionDetailsDirFmt\n- - SingleLanePerSamplePairedEndFastqDirFmt\n- - Kraken2DBDirectoryFormat\n- - OrdinationDirectoryFormat\n- - BooleanSeriesFormat\n- - BLASTDBDirFmtV5\n- - DADA2StatsFormat\n- - BLAST6Format\n- - KaijuDBDirectoryFormat\n- - ArtificialGroupingDirectoryFormat\n- - MultiFASTADirectoryFormat\n- - MAGtoContigsFormat\n- - DNASingleProfileHmmDirectoryFmt\n- - RNAFASTAFormat\n- - ProbabilitiesFormat\n- - SampleEstimatorDirFmt\n- - MultiplexedPairedEndBarcodeInSequenceDirFmt\n- - TableJSONLFileFormat\n- - LociDirectoryFormat\n- - QualityFilterStatsDirFmt\n- - TSVTaxonomyDirectoryFormat\n- - UchimeStatsFmt\n- - ProcrustesStatisticsFmt\n- - SILVATaxonomyDirectoryFormat\n- - AlphaDiversityFormat\n- - BLAST6DirectoryFormat\n- - MultiMAGSequencesDirFmt\n+ - DiamondDatabaseDirFmt\n - SeppReferenceDirFmt\n- - DNAMultipleProfileHmmDirectoryFmt\n- - RNASequencesDirectoryFormat\n- - ProbabilitiesDirectoryFormat\n+ - DifferentialDirectoryFormat\n+ - CasavaOneEightSingleLanePerSampleDirFmt\n+ - NCBITaxonomyDirFmt\n+ - ErrorCorrectionDetailsFmt\n+ - DataLoafPackageDirFmt\n+ - OrthologAnnotationDirFmt\n - PredictionsFormat\n- - PlacementsFormat\n- - NewickFormat\n- - TableJSONLDirFmt\n- - BrackenDBDirectoryFormat\n- - ProteinSequencesDirectoryFormat\n- - GenomeSequencesDirectoryFormat\n- - MultiplexedSingleEndBarcodeInSequenceDirFmt\n- - EggnogRefDirFmt\n- - UchimeStatsDirFmt\n- - AlignedRNAFASTAFormat\n- - EMPSingleEndDirFmt\n- - DADA2StatsDirFmt\n- - TaxonomicClassiferTemporaryPickleDirFmt\n- - AlphaDiversityDirectoryFormat\n- - Kraken2ReportDirectoryFormat\n- - MultiBowtie2IndexDirFmt\n- - SILVATaxidMapFormat\n- - CasavaOneEightSingleLanePerSampleDirFmt\n- - RNASingleProfileHmmDirectoryFmt\n+ - OrdinationDirectoryFormat\n+ - AlignedDNASequencesDirectoryFormat\n - PredictionsDirectoryFormat\n- - DeblurStatsDirFmt\n- - Bowtie2IndexDirFmt\n- - SeedOrthologDirFmt\n- - DiamondDatabaseFileFmt\n- - ProteinFASTAFormat\n- - AlignedRNASequencesDirectoryFormat\n- - EMPPairedEndDirFmt\n- - NewickDirectoryFormat\n- - SequenceCharacteristicsDirectoryFormat\n- - ContigSequencesDirFmt\n- - Kraken2DBReportFormat\n - RNAMultipleProfileHmmDirectoryFmt\n- - PlacementsDirFmt\n- - DecontamScoreDirFmt\n- - SILVATaxonomyFormat\n- - DataLoafPackageDirFmt\n- - SILVATaxidMapDirectoryFormat\n- - DNAFASTAFormat\n- - ProteinsDirectoryFormat\n- - MAGtoContigsDirFmt\n+ - DNAMultipleProfileHmmDirectoryFmt\n+ - UchimeStatsFmt\n+ - ErrorCorrectionDetailsDirFmt\n+ - EMPSingleEndDirFmt\n+ - KaijuDBDirectoryFormat\n - QIIME1DemuxDirFmt\n- - DiamondDatabaseDirFmt\n- - Kraken2DBReportDirectoryFormat\n- - PairedDNASequencesDirectoryFormat\n- - NCBITaxonomyDirFmt\n- - DistanceMatrixDirectoryFormat\n- - BIOMV210Format\n- - AlignedProteinFASTAFormat\n- - SingleLanePerSampleSingleEndFastqDirFmt\n- - BAMDirFmt\n- - PairedRNASequencesDirectoryFormat\n- - AlignedProteinSequencesDirectoryFormat\n- - GenesDirectoryFormat\n </help>\n <citations>\n <citation type="doi">10.1038/s41587-019-0209-9</citation>\n' |