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Changeset 15:f843b9afd94e (2025-03-29)

Previous changeset 14:83609ef746e9 (2025-01-11)

Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 08ce25c9b0ae236d3c0c352119de9db6b56c2925

added:
test-data/trimmed_barcode.tabular
test-data/trimmed_gene.tabular
test-data/trimmed_matrix.mtx

diff -r 83609ef746e9 -r f843b9afd94e test-data/trimmed_barcode.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/trimmed_barcode.tabular Sat Mar 29 07:35:47 2025 +0000

b'@@ -0,0 +1,1001 @@\n+barcodes\n+CTGTCTCTTATA\n+TTGGCTTGCAAC\n+CCGGTCAATGCC\n+GTCACCGTGCCC\n+AATCGACATCTG\n+CCGGTGTCCTCA\n+CGTTTGGACAAT\n+GTCCCCGGACGC\n+TGCTAACACATT\n+GTCACGTCGACA\n+CTGAACCCGGCT\n+GCCCGCAGTGAG\n+AGCCACGAAATT\n+GCCGAACACGAT\n+TTCAAGGCATTC\n+TGTCCTTAGCCT\n+CGTTACGATGCC\n+CGAACACCCCAG\n+CTGTTCTTCGGC\n+TCAGAGTTATTT\n+CCATTCCCCTCG\n+CGTGCGCCCGTA\n+GTATAACTTGAT\n+AGAGTATTACTT\n+GCGATTCACCTC\n+TTTCAGACATTT\n+GGACCGCTGTTA\n+CCCTAGAGAGTT\n+CGTTGCTCGCAT\n+GAGTGCAGGACA\n+AGCGTACCTATT\n+GGTCAGTTTCCA\n+GCCAGTCTGTCC\n+CGTCAGTCCGAT\n+GACATTTGTGTA\n+GCTGTCCCTCGT\n+AGCCCTGGATTA\n+TTCTCTTAGCTA\n+TGCCCATACATC\n+AATGTCTTTATA\n+AGGTCGCTTTCA\n+TTATTCGCGGAG\n+ACTTTCACCTCT\n+GTTCCATTGAGC\n+GGAACTTCCTAG\n+TGATGGACGTAT\n+ACTCCGGCAGTG\n+ACTTTGATTGGA\n+GTCGTGAGGCCG\n+CTTTTCCATGAG\n+AGCTGGCGTATT\n+CACCGCATGGCC\n+CTCCCGGAAATT\n+CGGGCCGAACGC\n+GGATTCGAGGTG\n+TTGCGTACAGAT\n+GTCGCAGTCTGC\n+CTCACCTCGTTT\n+GGATGGGCATCG\n+CTGTTCCCGTTT\n+ATATCCCCGAGC\n+TTCTCGTTGCCG\n+AATGCTTGGAGC\n+CAGTTTATACGT\n+TCTGTTAGTCCC\n+TCCTCCGTCCAC\n+AACAATTCCGAG\n+CGCCGCTTGACG\n+CATAGCTCATAA\n+CGTCACGTAGCA\n+TCTATGCTGTTT\n+TTTGACACTCTC\n+TTCCAAATTCCC\n+ATGTTAGAGTAA\n+GTCACATAGCTC\n+CGACGTCGTGCT\n+GCTAATCAATCC\n+CGCTGAGCGAGT\n+GCGGTAGAGCAT\n+TGATTATTTTCT\n+AATCACCGCGCC\n+GTTTCTTGCGCC\n+AGCACATTCTGT\n+TAATTCGCCAAC\n+ATCTGTCATTTC\n+CGATTGTGAGAG\n+GGTTAGCATGCC\n+GCGCCTACTTAT\n+GTGTCTAGAGTC\n+GATATAATCCAG\n+TTGCGAATTCCA\n+AGCAAATCGTAC\n+CTAAACTACGTT\n+GGCCGTGGTCTA\n+CAGCTTTTGACC\n+GCGTGCGGTCCA\n+GATGATACGAAT\n+CGTCCTCTCGCG\n+GGCAGTTTTCTT\n+AACCTGTCTCTT\n+TGATTATTTTCA\n+GTCAGGTCTCTG\n+GATCCCAACTGG\n+ACAAAGTAGTCC\n+CACCCGTTCGCT\n+CAAAGCTATTCC\n+ATTGCATGGCCG\n+TATTTGTTCGTT\n+AACAGTTGCAAC\n+TGATTATTTTCG\n+TAGCACGACGTT\n+AGCCGGCGTCGT\n+ATATCGGCGGCA\n+AAAAGTCGCTGC\n+CCCAGGAACTAG\n+AATTTCTAGTGA\n+TGATTATTTTCC\n+GTCACTCACTCT\n+GACAACTAACCT\n+AATACCTCGGTC\n+AACAATTCCGAC\n+ATCAAGGTATTG\n+GTAGGAGGTCGT\n+AATGTTCCGTCG\n+TTACTGTTGCAA\n+TGGCGCTCTGAG\n+GCGAAAGAACAG\n+CATGTTACATTC\n+GAATTGTACCGT\n+GTCGCCATTTGC\n+GTCCCGCTGCCA\n+ACTATGACCACC\n+TCGCGTCTCTGT\n+TGGAGCTCTATG\n+TACTGAGTCCCA\n+GCGCGCGACCAA\n+CCGCCTTGTGGT\n+ATTGTTGCTTCA\n+AGATTGTAAGTA\n+CGACCGGTTTTT\n+GTTCGAGTTAAG\n+CAGATCGAACAT\n+GAAACAGAGATA\n+CGACGTTCGCCG\n+TCGTGCCATACG\n+GCCGTTTCTGCT\n+CAAATTGCCGGG\n+CGAGCCCGTTCT\n+CTTGCGCACACG\n+TGATTACTTGTT\n+CCGACAGTGAAC\n+TCTTGAGCATAG\n+CAGATGGATCAC\n+GGACGCCCAGCA\n+AACAATTCCGAT\n+TAACAGTTGGAA\n+TGGTAGAGTCTA\n+TTTCTCCTCGCT\n+ATGCCATTAATC\n+GTAATGCGTTCC\n+TGCCTTTCTTTC\n+GTCGTCTGGCGA\n+TTGTCAAACTTA\n+GGGAAACTTTGG\n+AGGATTTCTAGA\n+GGTTCCGGCGAT\n+GAGAATCCACAA\n+ATGACCGACGAA\n+GCCTCCAAACAC\n+GGCCGTTATTTC\n+GTTTTACCACAC\n+AGCCAGACACGC\n+ACCCTCCTGGAA\n+GCCTTGCAATGT\n+GTCGAGGTGCAG\n+GCCTTCTTTCAT\n+GAAGTCAATCCG\n+ATGACAGAACCA\n+CGAACCTCAAGA\n+AGAAGTCGTTTT\n+CTTTCAGCCAGT\n+TCCAATTACATC\n+TGCTGGTTGTCC\n+GCGATAGCGGCC\n+CCTTCATTTACC\n+GTCAAGAGGTAA\n+TACAATGCCAAA\n+GTCATCTCCTAA\n+TTAGAACACCTG\n+TTCATTCAGGCA\n+GATCACCTGACT\n+TGATTACTTGTC\n+GGAAAGTTGTTT\n+CGCAATCTCCTT\n+GTGACCCCCTTC\n+GCCCCCGTCAGC\n+CGTTTCTATTTG\n+ACTTCGGACGGC\n+GGCACACTCTCT\n+CAGTTCGCTACA\n+AACGAAGGTGAA\n+CGCCGGTTTAAG\n+CCGTTTCGACCC\n+ACGCGCAAGTCC\n+CCTGAAGCCTAC\n+GTTCACCTTGGC\n+ACCATGTGCCCG\n+GACCGCGTTCCC\n+CCTGTTGATCGG\n+CGGTTGACAGTT\n+ACATCATCTGTT\n+AACAACTTAAGA\n+GAGATTTCGAGG\n+GCCTTCTTTCAG\n+AACAATTCCGAA\n+GCAGTTTGGCCT\n+AGCGGTAGACGG\n+ATACTTCAGTCC\n+CCCTGTCGTTTA\n+TCCGACGCTCGC\n+GTGGAATACACC\n+TGTTACCAGTTG\n+AGGTTGGTTTCC\n+TACTTTGACAGT\n+GCCGCCGCGTCC\n+GGCCAAATTGCG\n+TATTGCCACGCT\n+GCCACTTTTCAT\n+TCACAGCGAAGG\n+GATAAATCAGAT\n+GCGAGCCTCAGA\n+ATTCCATGCTCC\n+GTTGCGTCTCCT\n+CTCTTTAACATC\n+TTGCATCGGTGA\n+GTGGTCGGGAAT\n+CCTTCGTTACTG\n+AGTAGCAGCCTT\n+AAACGTGCTTTC\n+CCATTTATCGGT\n+ACCTACACCCAA\n+ACCATACCCCGC\n+ATTAGCAGCGAG\n+GATTCCCAGTAC\n+GCCTTCTTTCAC\n+TTCTGTCCCTCA\n+AATCCGGCTGCC\n+GGGCTGCCAGAT\n+CGGATTTCTGCT\n+ACGGACTTTCTC\n+CTTGAGTTAGGG\n+CTTCCCACGATA\n+TAGCTCCCCCCA\n+CCCAGATCCATT\n+AGCACACAATTC\n+AAAAAAAAAAAA\n+TGGGAGACAGCA\n+ACGGCGCGCTGT\n+TCGCAGCAAACT\n+ACGCTGCAAATT\n+TGTTGGTATCCG\n+AGTTTAATTCTC\n+AGCTCTCGCTCC\n+AAACAATTTAAG\n+GCGGAACATTAA\n+TGATTACTTGTG\n+GCAAGAGACGGG\n+CATATTCCAATG\n+TTGACGGGCGGC\n+CACAAGATAGCC\n+GCCCGCTGCGCA\n+GTGCACCAACAC\n+GGTGCTCCTTGA\n+CGACTAGTTCAG\n+GTTCACTGTCAC\n+GCACTACCAGTT\n+ACCCTCGCGGAA\n+CGGACGACTTCT\n+TTCTAGAGGATA\n+TTAACATTGAGT\n+CATCTCATGCTC\n+GGCACGCAATGT\n+GGCAACTAGGTC\n+CAAGGAG'..b'CTTCTGCA\n+AAACGACCTTCA\n+TCCGGCCACCAG\n+TGAAGTGCAAAA\n+CGGTGAGTAACA\n+ATGACTTCTCTC\n+TCGGGGCCCCGC\n+ATGAATTAACTC\n+GCCCAAGGTCTG\n+TCAAAATGCCCT\n+ACCGTTAAGTCG\n+CCCAAAGGCGCG\n+CCTCGGTCCCTC\n+TCGGTCGAGTTG\n+TGTCCACGCAAG\n+GCTAACGTTCCT\n+GTTCGTCCGCTC\n+CACCGTGAGTTT\n+CAGAATCCCAAA\n+CGTTAGGTCATA\n+CGCAGCAAGTTG\n+GAGAATCGAAAG\n+TTCTTAGACCTT\n+CTTGTTCTGGCC\n+CGTCCCGCGTAG\n+TTAGTGACGCCC\n+AGTCAACTATAG\n+GCAGGCTTCTCT\n+CAGTTAGGCACC\n+GCTGTCCGGCGT\n+GAGTTCTCAGAC\n+CAATTGGACCTA\n+TTCCCCTCCTAA\n+CGTTCGGCGTGG\n+CCCTCTTTATGG\n+TGAGGAGGTCAA\n+TTAAGGGTCCTC\n+GTCATGTTTTTT\n+TGCGGGCCCTGC\n+GGGACCATAGAG\n+GCTCTGACGAGG\n+AGGTAGCATGAA\n+CTATGCGATTTA\n+ACATAATGCCAG\n+ATTCTTTGGTGC\n+AGAACCGGTAGT\n+TATGTCCGGCGC\n+CGTTTATTGGCT\n+ACGTCGTGGCGC\n+GGTGGAGGGTCT\n+CTTGAGCAGCCT\n+CCCGCATCCACC\n+TAAGTAGGCTGC\n+TGCCACGCCCGA\n+TATGAGCGCGTC\n+CCACCTTCGGCT\n+CAACGGGAGGGA\n+CAGTAACCCCAT\n+CTAAGCCGCTGG\n+GATGGTTAGTCC\n+CAACTCCTGCAG\n+AGACTACTGCAC\n+GAGTGCAAACGT\n+AGTGATTTAAAC\n+TTACCCGTCTGT\n+CATCAGCAGAGG\n+TGATTGCATAAG\n+TCTCAGATTAAT\n+TTTCTGGTCAGT\n+CGTAGCTTGCGC\n+TGTAATGGCTAG\n+CCAGCATCGGCC\n+GGCTGCCATGGC\n+CAGATCCGGTCA\n+CGTTAGTCCTAG\n+TGACCAATCCCT\n+CGACTTCTTTCC\n+GCCATCGGGTCG\n+TACCACAATATG\n+CGCAGCGTCGTC\n+AACGTCGGCGGT\n+CACAAACCCAAC\n+CGAATGGCACAG\n+GTTATTCAGTGA\n+CAACTTTTGCAC\n+TTCATTGGTTTG\n+CGTCAATCGTGC\n+AGTACCCCCTAC\n+GTTCTTTTGTCG\n+GGCGCTACTGTA\n+TGCCACGCCCGT\n+GGACAGAGTTGG\n+CCCGTATCCTCG\n+TCCTGGTCCTCG\n+CCTGAATGTGTT\n+ACTGGTATTGCC\n+GGCCCAGCTAGA\n+TGTCGATCCGAA\n+TGAAAGCGTGGC\n+TTCCTGACGCTT\n+AATCCGCAGATG\n+AGGTAGCATGAC\n+CCAACCGCTTTG\n+AGTTCCGGGCGC\n+TTTTTTTTACAT\n+CGACTTGCTTAA\n+GACTTGTAGATA\n+GGGCCGCTGATA\n+AAGAAACGGATA\n+TGACCAAAGCGC\n+GGTTAGTAAGAT\n+AGGTCCTTGGGG\n+CGGTCACTTTAG\n+TGCAGTAAAGAC\n+TTCAGGGACAAA\n+CGCCGCGCTGGA\n+TATGTCTTCTTT\n+CTAGCGCGCTTA\n+GTGTTACATTGA\n+TAGCAGTCATGC\n+AAAGAGCTTGCC\n+AGCACCCCCGGG\n+CAAGTTACCCAA\n+GCGTCGACTCGG\n+TGACAATAATAC\n+CTATAGTTCGTC\n+GTCCCACTCGCC\n+TAGTTGGCTAAG\n+ACTTGCGTCCCC\n+ACACGCCTTTTC\n+TCGTTCCCCAAT\n+GTCACCGAGTAA\n+AGCACCAACTGC\n+CTCACGATAGCT\n+AATCTGGACTTA\n+CCATAAGTGTCA\n+TAGCTCGAATGT\n+AACCCCTCTGCG\n+GTGGTGTAGTGA\n+CCCGTATCCTCT\n+AATTCCCAAGCA\n+AGATCATTAAGG\n+ACAGGACCGCTC\n+CGCCGCGTGCCC\n+CTTTTGACGCTG\n+CCATGGTCTCTT\n+TAATGCCACATG\n+GATGATCAAACC\n+ACCATTCAAGAG\n+AGTGCCGACAGT\n+AGTTCTCGCGCC\n+TCTGGTGGACAC\n+TCAAAATGCCCG\n+GACAGGTCTACC\n+CACAACCCGACC\n+AGCGAAGGTTTA\n+ACTTCGTCTGCT\n+ACTGTATCACCA\n+AGTTTTGAGCCA\n+GGACCACATAGT\n+GGCTGAACAACA\n+ATGGCATTGTCG\n+TCGTCAGCCCTT\n+CGTAGCCCTTGT\n+GATCGCTAGTTC\n+AGTCGCCGCGCG\n+CGTCCTATCGTT\n+AGACATTTGATC\n+CTCTTCTACTAA\n+ATCGAATAGGCA\n+GAGTGGTGTGAC\n+CATAGACACCAG\n+CTTGTCTGTGGA\n+CAAGGTTGTTCG\n+GCACTGAACATA\n+TCTCTCACCCCG\n+CGTGCTTATTGT\n+GCTACACAGGTA\n+TTTGCAGTCCAT\n+TAGTTGTGTCGG\n+GTTAGCATTCCG\n+TGAATTCGGCCG\n+CGCTAGTGGCTT\n+TAGCCGTGCGGG\n+ATCGAATAGGCT\n+CCATGGAGCCGA\n+ACCAGGACACGA\n+CTCAGCGATCCG\n+CCGTCCCTCGTG\n+ACGAAGTACGCC\n+TGCAGACGGGAA\n+CTCTGATATGGT\n+AGTGCCAATTGA\n+TTTCCCGTCGGA\n+ATCCATCGTTGA\n+ACGTTGATCTAG\n+TTGCGTGGTTTT\n+TATTTCTTACTT\n+ATCGAATAGGCG\n+TAGCAGGCGAGA\n+GTGGCAAGATCT\n+ATCCTATCTCCA\n+GTAAGTTTAGTC\n+TCTCCGGATACC\n+AGAATTGGTCAA\n+GACTGCTGGTAT\n+GCGACTTGACCG\n+TCCATTAAACCG\n+CTTTGCTGTGAG\n+GGTAAGTTCCCC\n+ATCACTTCTGGT\n+CCTATCAGGACT\n+TATGGTTGATTC\n+GTAAAATGGTGC\n+CTAACAAAGCGA\n+ACGCCACGAATA\n+TTTGGTCTACGC\n+GTCCCGTCGGTG\n+AAGCGTCCTTCC\n+GTTTCCGAGCAA\n+CGCAGAGCGACA\n+ATAGAAGGTTAG\n+ATTTGGGCGCCG\n+TACATGCTTCGG\n+TAGTTGACTTGA\n+TATTTTGTAGGA\n+TTCCTGACGCTA\n+GCGTGCCATCTC\n+CATAGCGATTTC\n+CCGCAGTGTGGC\n+TTTCAGAAGACA\n+AGCACCCTTTAC\n+CCTTGAATGGTT\n+GTAACCGGGCAG\n+GCAAGATTTTGG\n+TGAACATTACCG\n+CCTACTTTGAGA\n+TTTCAATAACGA\n+GCTGAGATGGGT\n+CTAAAGTGGCTA\n+GCGCAGGAGTGA\n+AAGGACCGCGAA\n+CTTCGTCAATCA\n+CTCTGGGAGTCT\n+CCTGCCTTGGAT\n+ATGCAATCGGAT\n+AGTGTGCGGCAA\n+TTGGATCATGCT\n+GCCACATACCCG\n+TCTCCGCTCACC\n+TGATTCCTGTCC\n+GACTGGCTCCAT\n+CACAGTATATAA\n+CGAGTAGGAGAC\n+AGGGCCGCGCTG\n+GAAACGGTTGTG\n+ACGGAGCCCGAT\n+TTATAGGCATCT\n+GTTTTGGCGCTG\n+GGGGGTTGCCTT\n+GCGTAATGGGTC\n+GTCTCAGTAAAA\n+CTCTTGGCGCTT\n+TTAAGCATGTAG\n+AGTAATCAGGCC\n+TAAATCCGTGAA\n+GTAGGCCAGCTA\n+AGAACCGAACGC\n+GCCACACTAGCT\n+TTGCCTGTTTTC\n+TTAACGTGATGT\n+GCGGTACGTGCG\n+CCCTCTGCTCGA\n+AAACCTACATAG\n+CGAAATGCACTA\n+AAGACCTCTAGA\n+TGAGGCGCCCGT\n+CAAACACCTGCG\n+TTTGTCCAGGTA\n+TTCGGGCGTCGT\n+CCATCGGCTCTG\n+TGTAATGCTATC\n+TGAATTCGGCCT\n+AAACCTACATAT\n+ATTCAGCACAAC\n+GAGGTGAGAAGA\n'

diff -r 83609ef746e9 -r f843b9afd94e test-data/trimmed_gene.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/trimmed_gene.tabular Sat Mar 29 07:35:47 2025 +0000

b'@@ -0,0 +1,501 @@\n+gene_id\tsymbol\tmito\n+ENSMUSG00000051951\tXkr4\tFalse\n+ENSMUSG00000102851\tGm18956\tFalse\n+ENSMUSG00000103147\tGm7341\tFalse\n+ENSMUSG00000025900\tRp1\tFalse\n+ENSMUSG00000102948\tGm6101\tFalse\n+ENSMUSG00000025902\tSox17\tFalse\n+ENSMUSG00000102269\tGm7357\tFalse\n+ENSMUSG00000103003\tGm38076\tFalse\n+ENSMUSG00000102735\tGm7369\tFalse\n+ENSMUSG00000098104\tGm6085\tFalse\n+ENSMUSG00000102175\tGm6119\tFalse\n+ENSMUSG00000103265\tGm2053\tFalse\n+ENSMUSG00000103922\tGm6123\tFalse\n+ENSMUSG00000033845\tMrpl15\tFalse\n+ENSMUSG00000025903\tLypla1\tFalse\n+ENSMUSG00000104217\tGm37988\tFalse\n+ENSMUSG00000033813\tTcea1\tFalse\n+ENSMUSG00000062588\tGm6104\tFalse\n+ENSMUSG00000002459\tRgs20\tFalse\n+ENSMUSG00000091305\tGm17100\tFalse\n+ENSMUSG00000091665\tGm17101\tFalse\n+ENSMUSG00000033793\tAtp6v1h\tFalse\n+ENSMUSG00000104352\tGm7182\tFalse\n+ENSMUSG00000025905\tOprk1\tFalse\n+ENSMUSG00000103936\tGm36965\tFalse\n+ENSMUSG00000033774\tNpbwr1\tFalse\n+ENSMUSG00000103090\tGm19214\tFalse\n+ENSMUSG00000025907\tRb1cc1\tFalse\n+ENSMUSG00000087247\tAlkal1\tFalse\n+ENSMUSG00000103355\tGm2147\tFalse\n+ENSMUSG00000102706\tGm7417\tFalse\n+ENSMUSG00000103845\tGm19026\tFalse\n+ENSMUSG00000033740\tSt18\tFalse\n+ENSMUSG00000104385\tGm7449\tFalse\n+ENSMUSG00000102135\tGm37108\tFalse\n+ENSMUSG00000103282\tGm37275\tFalse\n+ENSMUSG00000102534\tGm37225\tFalse\n+ENSMUSG00000102213\tGm37489\tFalse\n+ENSMUSG00000103629\tGm5694\tFalse\n+ENSMUSG00000051285\tPcmtd1\tFalse\n+ENSMUSG00000098201\tGm26983\tFalse\n+ENSMUSG00000048538\tGm9826\tFalse\n+ENSMUSG00000103709\tNras-ps2\tFalse\n+ENSMUSG00000102768\tGm19002\tFalse\n+ENSMUSG00000103498\tGm18984\tFalse\n+ENSMUSG00000102320\tGm37791\tFalse\n+ENSMUSG00000104226\tGm7470\tFalse\n+ENSMUSG00000103903\tRps2-ps2\tFalse\n+ENSMUSG00000103557\tGm38216\tFalse\n+ENSMUSG00000025909\tSntg1\tFalse\n+ENSMUSG00000086235\tGm16284\tFalse\n+ENSMUSG00000084353\tGm15452\tFalse\n+ENSMUSG00000103933\tGm36964\tFalse\n+ENSMUSG00000086195\tGm6152\tFalse\n+ENSMUSG00000104504\tGm7445\tFalse\n+ENSMUSG00000066693\tGm7493\tFalse\n+ENSMUSG00000103819\tGm38008\tFalse\n+ENSMUSG00000101571\tGm6187\tFalse\n+ENSMUSG00000104428\tGm18299\tFalse\n+ENSMUSG00000102272\tGm7512\tFalse\n+ENSMUSG00000103411\tGm18300\tFalse\n+ENSMUSG00000061024\tRrs1\tFalse\n+ENSMUSG00000025911\tAdhfe1\tFalse\n+ENSMUSG00000081441\tGm6161\tFalse\n+ENSMUSG00000067879\tVxn\tFalse\n+ENSMUSG00000025912\tMybl1\tFalse\n+ENSMUSG00000045210\tVcpip1\tFalse\n+ENSMUSG00000025915\tSgk3\tFalse\n+ENSMUSG00000046334\tGm6195\tFalse\n+ENSMUSG00000046101\tMcmdc2\tFalse\n+ENSMUSG00000099032\tTcf24\tFalse\n+ENSMUSG00000025916\tPpp1r42\tFalse\n+ENSMUSG00000025917\tCops5\tFalse\n+ENSMUSG00000056763\tCspp1\tFalse\n+ENSMUSG00000067851\tArfgef1\tFalse\n+ENSMUSG00000042501\tCpa6\tFalse\n+ENSMUSG00000083422\tGm15604\tFalse\n+ENSMUSG00000081417\tGm15603\tFalse\n+ENSMUSG00000100212\tGm5522\tFalse\n+ENSMUSG00000100648\tGm28659\tFalse\n+ENSMUSG00000048960\tPrex2\tFalse\n+ENSMUSG00000101827\tGm28686\tFalse\n+ENSMUSG00000057715\tA830018L16Rik\tFalse\n+ENSMUSG00000099845\tGm29273\tFalse\n+ENSMUSG00000101610\tGm7560\tFalse\n+ENSMUSG00000097628\tGm2383\tFalse\n+ENSMUSG00000098163\tGm6216\tFalse\n+ENSMUSG00000016918\tSulf1\tFalse\n+ENSMUSG00000025938\tSlco5a1\tFalse\n+ENSMUSG00000069620\tGm5250\tFalse\n+ENSMUSG00000042414\tPrdm14\tFalse\n+ENSMUSG00000005886\tNcoa2\tFalse\n+ENSMUSG00000101171\tGm7593\tFalse\n+ENSMUSG00000025935\tTram1\tFalse\n+ENSMUSG00000025937\tLactb2\tFalse\n+ENSMUSG00000067813\tXkr9\tFalse\n+ENSMUSG00000097711\tGm5523\tFalse\n+ENSMUSG00000025932\tEya1\tFalse\n+ENSMUSG00000025930\tMsc\tFalse\n+ENSMUSG00000081201\tSmt3h2-ps4\tFalse\n+ENSMUSG00000082193\tRpl5-ps1\tFalse\n+ENSMUSG00000032769\tTrpa1\tFalse\n+ENSMUSG00000073737\tGm10566\tFalse\n+ENSMUSG00000092083\tKcnb2\tFalse\n+ENSMUSG00000101652\tGm6060\tFalse\n+ENSMUSG00000100814\tGm28669\tFalse\n+ENSMUSG00000025925\tTerf1\tFalse\n+ENSMUSG00000032719\tSbspon\tFalse\n+ENSMUSG00000100652\tGm7634\tFalse\n+ENSMUSG00000067795\t4930444P10Rik\tFalse\n+ENSMUSG00000043716\tRpl7\tFalse\n+ENSMUSG00000025921\tRdh10\tFalse\n+ENSMUSG00000025920\tStau2\tFalse\n+ENSMUSG00000025939\tUbe2w\tFalse\n+ENSMUSG00000079658\tEloc\tFalse\n+ENSMUSG00000100959\tGm7654\tFalse\n+ENSMUSG00000025940\tTmem70\tFalse\n+ENSMUSG00000025779\tLy96\tFalse\n+ENSMUSG00000100093\tGm29649\tFalse\n+ENSMUSG00000091020\tGm'..b'\tGm3489\tFalse\n+ENSMUSG00000100013\tGm19480\tFalse\n+ENSMUSG00000101251\tGm3496\tFalse\n+ENSMUSG00000101937\tGm5268\tFalse\n+ENSMUSG00000026043\tCol3a1\tFalse\n+ENSMUSG00000026042\tCol5a2\tFalse\n+ENSMUSG00000100218\tGm8296\tFalse\n+ENSMUSG00000100361\tGm7063\tFalse\n+ENSMUSG00000100894\tGm8304\tFalse\n+ENSMUSG00000100843\tGm8307\tFalse\n+ENSMUSG00000025995\tWdr75\tFalse\n+ENSMUSG00000099850\tGm28906\tFalse\n+ENSMUSG00000084817\tGm5526\tFalse\n+ENSMUSG00000098549\tGm5269\tFalse\n+ENSMUSG00000099381\tGm18303\tFalse\n+ENSMUSG00000025993\tSlc40a1\tFalse\n+ENSMUSG00000099946\tGm9496\tFalse\n+ENSMUSG00000070896\tRpl23a-ps1\tFalse\n+ENSMUSG00000090682\tGm3852\tFalse\n+ENSMUSG00000044457\tStk-ps2\tFalse\n+ENSMUSG00000099432\tGm18849\tFalse\n+ENSMUSG00000041144\tDnah7b\tFalse\n+ENSMUSG00000101262\tGm8326\tFalse\n+ENSMUSG00000101337\tDnah7c\tFalse\n+ENSMUSG00000025986\tSlc39a10\tFalse\n+ENSMUSG00000100160\tGm28527\tFalse\n+ENSMUSG00000101921\tGm28825\tFalse\n+ENSMUSG00000081185\tGm4852\tFalse\n+ENSMUSG00000100530\tGm18117\tFalse\n+ENSMUSG00000100033\tGm8337\tFalse\n+ENSMUSG00000101996\tGm19206\tFalse\n+ENSMUSG00000096973\tGm5974\tFalse\n+ENSMUSG00000100866\tGm28830\tFalse\n+ENSMUSG00000101721\tGm8354\tFalse\n+ENSMUSG00000099376\tGm19124\tFalse\n+ENSMUSG00000097883\tGm8357\tFalse\n+ENSMUSG00000099698\tGm28740\tFalse\n+ENSMUSG00000099454\tGm8367\tFalse\n+ENSMUSG00000099627\tGm6757\tFalse\n+ENSMUSG00000099577\tGm3605\tFalse\n+ENSMUSG00000099882\tGm28388\tFalse\n+ENSMUSG00000101760\tGm8384\tFalse\n+ENSMUSG00000099864\tGm8391\tFalse\n+ENSMUSG00000099941\tGm20118\tFalse\n+ENSMUSG00000026109\tTmeff2\tFalse\n+ENSMUSG00000045954\tCavin2\tFalse\n+ENSMUSG00000099741\tGm5253\tFalse\n+ENSMUSG00000026107\tNabp1\tFalse\n+ENSMUSG00000018417\tMyo1b\tFalse\n+ENSMUSG00000100696\tGm8419\tFalse\n+ENSMUSG00000072324\tGm8420\tFalse\n+ENSMUSG00000062939\tStat4\tFalse\n+ENSMUSG00000078291\tGm3940\tFalse\n+ENSMUSG00000026104\tStat1\tFalse\n+ENSMUSG00000099569\tGm18301\tFalse\n+ENSMUSG00000026103\tGls\tFalse\n+ENSMUSG00000099648\tGm5975\tFalse\n+ENSMUSG00000002881\tNab1\tFalse\n+ENSMUSG00000097833\tGm5976\tFalse\n+ENSMUSG00000101501\tRps27a-ps1\tFalse\n+ENSMUSG00000100007\tGm5527\tFalse\n+ENSMUSG00000043015\tNemp2\tFalse\n+ENSMUSG00000041439\tMfsd6\tFalse\n+ENSMUSG00000100230\tGm28650\tFalse\n+ENSMUSG00000026102\tInpp1\tFalse\n+ENSMUSG00000041426\tHibch\tFalse\n+ENSMUSG00000089802\tGm16107\tFalse\n+ENSMUSG00000043629\t1700019D03Rik\tFalse\n+ENSMUSG00000026100\tMstn\tFalse\n+ENSMUSG00000060715\t1700019A02Rik\tFalse\n+ENSMUSG00000026098\tPms1\tFalse\n+ENSMUSG00000026097\tOrmdl1\tFalse\n+ENSMUSG00000100679\tGm28778\tFalse\n+ENSMUSG00000026096\tOsgepl1\tFalse\n+ENSMUSG00000099913\tGm28551\tFalse\n+ENSMUSG00000101838\tGm18800\tFalse\n+ENSMUSG00000026095\tAsnsd1\tFalse\n+ENSMUSG00000117809\tGm50478\tFalse\n+ENSMUSG00000100267\tGm28779\tFalse\n+ENSMUSG00000099450\tGm6799\tFalse\n+ENSMUSG00000100069\tGm6801\tFalse\n+ENSMUSG00000096141\tDnah7a\tFalse\n+ENSMUSG00000026094\tStk17b\tFalse\n+ENSMUSG00000042807\tHecw2\tFalse\n+ENSMUSG00000025983\tCcdc150\tFalse\n+ENSMUSG00000041303\tGtf3c3\tFalse\n+ENSMUSG00000109809\tGm34066\tFalse\n+ENSMUSG00000073678\tPgap1\tFalse\n+ENSMUSG00000101130\tGm19637\tFalse\n+ENSMUSG00000052331\tAnkrd44\tFalse\n+ENSMUSG00000025982\tSf3b1\tFalse\n+ENSMUSG00000025981\tCoq10b\tFalse\n+ENSMUSG00000101122\tGm17971\tFalse\n+ENSMUSG00000025980\tHspd1\tFalse\n+ENSMUSG00000073676\tHspe1\tFalse\n+ENSMUSG00000100736\tGm5147\tFalse\n+ENSMUSG00000089670\tGm16581\tFalse\n+ENSMUSG00000025979\tMob4\tFalse\n+ENSMUSG00000061863\tGm6822\tFalse\n+ENSMUSG00000025978\tRftn2\tFalse\n+ENSMUSG00000046994\tMars2\tFalse\n+ENSMUSG00000025977\tBoll\tFalse\n+ENSMUSG00000100215\tGm8292\tFalse\n+ENSMUSG00000101945\tGm29138\tFalse\n+ENSMUSG00000101085\tGm8531\tFalse\n+ENSMUSG00000038349\tPlcl1\tFalse\n+ENSMUSG00000100309\tGm6644\tFalse\n+ENSMUSG00000100944\tGm28900\tFalse\n+ENSMUSG00000045336\tHsfy2\tFalse\n+ENSMUSG00000038331\tSatb2\tFalse\n+ENSMUSG00000101129\tGm5254\tFalse\n+ENSMUSG00000038323\t1700066M21Rik\tFalse\n+ENSMUSG00000048495\tTyw5\tFalse\n+ENSMUSG00000025971\tMaip1\tFalse\n+ENSMUSG00000101826\tGm8581\tFalse\n+ENSMUSG00000101151\tGm17929\tFalse\n+ENSMUSG00000038305\tSpats2l\tFalse\n+ENSMUSG00000054770\tKctd18\tFalse\n+ENSMUSG00000026039\tSgo2a\tFalse\n+ENSMUSG00000063558\tAox1\tFalse\n+ENSMUSG00000064294\tAox3\tFalse\n'

diff -r 83609ef746e9 -r f843b9afd94e test-data/trimmed_matrix.mtx
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/trimmed_matrix.mtx Sat Mar 29 07:35:47 2025 +0000

b'@@ -0,0 +1,8120 @@\n+%%MatrixMarket matrix coordinate real general\n+%\n+500 1000 8117\n+14 2 2\n+17 2 1\n+62 2 1\n+111 2 5E-1\n+115 2 1\n+151 2 2\n+184 2 1\n+191 2 5E-1\n+193 2 0\n+194 2 1\n+195 2 2.5\n+196 2 9.306E-3\n+294 2 1\n+304 2 1\n+315 2 1\n+328 2 1\n+330 2 1\n+355 2 1\n+362 2 1\n+370 2 2\n+371 2 1\n+404 2 1\n+427 2 1\n+435 2 1\n+437 2 1\n+469 2 1\n+470 2 4\n+473 2 5E-1\n+474 2 1\n+493 2 1\n+14 3 1\n+107 3 2\n+111 3 1\n+151 3 2\n+190 3 1E-6\n+191 3 5E-1\n+193 3 6\n+194 3 3.5\n+195 3 2.5\n+242 3 1\n+256 3 1\n+281 3 1\n+293 3 1\n+314 3 1\n+328 3 3\n+336 3 1\n+366 3 1\n+451 3 1\n+470 3 5\n+473 3 4\n+107 4 1\n+111 4 2\n+115 4 3\n+151 4 5\n+191 4 1\n+193 4 6\n+194 4 5\n+195 4 2.5\n+242 4 1\n+255 4 1\n+271 4 1\n+272 4 1\n+282 4 1\n+304 4 1\n+311 4 1\n+314 4 1\n+315 4 1\n+328 4 2.5E-1\n+336 4 1\n+370 4 1\n+390 4 1\n+470 4 2\n+473 4 4\n+474 4 3\n+498 4 2\n+16 5 5E-1\n+17 5 5E-1\n+40 5 1\n+74 5 1\n+94 5 3\n+107 5 3\n+111 5 5E-1\n+114 5 1\n+115 5 2\n+151 5 1\n+191 5 5E-1\n+193 5 3E-6\n+194 5 0\n+195 5 3.5\n+219 5 1\n+247 5 2\n+256 5 2\n+271 5 1\n+281 5 1\n+293 5 3\n+296 5 1\n+303 5 1\n+315 5 1\n+316 5 1\n+328 5 5E-1\n+330 5 1\n+336 5 2\n+352 5 1\n+355 5 1\n+370 5 1\n+435 5 1\n+469 5 1\n+470 5 2\n+473 5 4\n+17 6 1\n+40 6 1\n+62 6 2\n+75 6 1\n+94 6 1\n+111 6 2\n+151 6 1\n+193 6 2.4E-5\n+242 6 1\n+255 6 1\n+256 6 1\n+271 6 1\n+284 6 1\n+293 6 2\n+296 6 1\n+314 6 1\n+328 6 3\n+329 6 1\n+330 6 1\n+366 6 1\n+427 6 1\n+435 6 1\n+450 6 1\n+470 6 2\n+473 6 5\n+474 6 2\n+497 6 5E-1\n+498 6 5E-1\n+17 7 2\n+114 7 1\n+115 7 1\n+117 7 1\n+192 7 5E-1\n+193 7 4\n+194 7 3\n+195 7 2\n+247 7 1\n+293 7 2\n+311 7 1\n+314 7 1\n+315 7 1\n+328 7 1.5\n+336 7 1\n+352 7 1\n+370 7 1\n+371 7 1\n+390 7 1\n+435 7 1\n+470 7 2\n+473 7 4\n+474 7 3\n+477 7 1\n+14 8 1\n+17 8 1\n+40 8 2\n+62 8 1\n+94 8 1\n+111 8 4\n+115 8 1\n+117 8 2\n+151 8 2\n+166 8 1\n+192 8 5E-1\n+193 8 1.47E-4\n+194 8 2\n+195 8 2.5\n+196 8 2.3E-5\n+219 8 5E-1\n+247 8 1\n+255 8 1\n+282 8 1\n+310 8 1\n+328 8 2.5E-1\n+352 8 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