| Previous changeset 43:e42284a13168 (2016-07-08) Next changeset 45:16e961b2f35c (2016-07-08) |
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Commit message:
planemo upload |
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modified:
data_manager_gene_annotation/data_manager/data_manager.py data_manager_gene_annotation/data_manager_conf.xml |
| b |
| diff -r e42284a13168 -r f8cfca91827a data_manager_gene_annotation/data_manager/data_manager.py --- a/data_manager_gene_annotation/data_manager/data_manager.py Fri Jul 08 14:45:18 2016 -0400 +++ b/data_manager_gene_annotation/data_manager/data_manager.py Fri Jul 08 14:54:06 2016 -0400 |
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| @@ -62,10 +62,10 @@ data_manager_entry = { 'data_tables': { 'gene_annotation': { - 'value': gene_annotation_file_name.split(".")[0], + 'value': gene_annotation_file_name, 'dbkey': gene_annotation_file_name.split(".")[0], 'name': name, - 'path': gene_annotation_file_name + 'path': os.path.join(work_dir, gene_annotation_file_name) } } } |
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| diff -r e42284a13168 -r f8cfca91827a data_manager_gene_annotation/data_manager_conf.xml --- a/data_manager_gene_annotation/data_manager_conf.xml Fri Jul 08 14:45:18 2016 -0400 +++ b/data_manager_gene_annotation/data_manager_conf.xml Fri Jul 08 14:54:06 2016 -0400 |
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| @@ -9,11 +9,12 @@ <column name="name" /> <column name="path" output_ref="out_file"> <move type="file"> - <source>${path}</source> + <source>${value}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}"> gene_annotations/${path}</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gene_annotations/${path}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH + }/gene_annotations/${value}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> |