| Previous changeset 7:c4f39bf4a068 (2021-12-02) Next changeset 9:0bff0ee0683a (2022-08-24) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raceid3 commit 455bad7eca54164f95755174904842907846bb42" |
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modified:
macros.xml raceid_clustering.xml |
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| diff -r c4f39bf4a068 -r f911a64454fb macros.xml --- a/macros.xml Thu Dec 02 16:20:43 2021 +0000 +++ b/macros.xml Mon Dec 20 10:12:47 2021 +0000 |
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| @@ -26,7 +26,8 @@ } </token> <token name="@TOOL_VERSION@">0.2.3</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> + <token name="@PROFILE@">21.01</token> <macro name="version_command_config" token_prog="temp" token_cheetah="temp2" token_out="2> '$outlog'"> <version_command><![CDATA[ |
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| diff -r c4f39bf4a068 -r f911a64454fb raceid_clustering.xml --- a/raceid_clustering.xml Thu Dec 02 16:20:43 2021 +0000 +++ b/raceid_clustering.xml Mon Dec 20 10:12:47 2021 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="raceid_clustering" name="Clustering using RaceID" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" > +<tool id="raceid_clustering" name="Clustering using RaceID" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@" > <description>performs clustering, outlier detection, dimensional reduction</description> <macros> <import>macros.xml</import> @@ -8,7 +8,7 @@ <expand macro="version_command_config" prog="cluster.R" cheetah="CLUSTER_CHEETAH" out="&> '$outlog'" /> <inputs> - <param name="inputrds" type="data" format="rdata" label="Input RaceID RDS" help="Requires the RDS output from the normalisation stage" /> + <param name="inputrds" type="data" format="rds" label="Input RaceID RDS" help="Requires the RDS output from the normalisation stage" /> <section name="clust" title="Clustering" expanded="true" > <!-- CompDist --> <param name="metric" type="select" label="Distance Metric" > @@ -79,7 +79,7 @@ </inputs> <outputs> <data name="outpdf" format="pdf" label="${tool.name} on ${on_string}: PDF Report" /> - <data name="outrdat" format="rdata" label="${tool.name} on ${on_string}: RDS" /> + <data name="outrdat" format="rds" label="${tool.name} on ${on_string}: RDS" /> <data name="outassignments" format="tabular" label="${tool.name} on ${on_string}: Cell-to-Cluster assignments" /> <data name="outgenelist" format="tabular" label="${tool.name} on ${on_string}: Cluster - Genes per Cluster" /> <data name="outlog" format="txt" label="${tool.name} on ${on_string}: Log" > @@ -95,7 +95,7 @@ <has_line_matching expression=".*ENSDARG00000027310\s+8.*" /> </assert_contents> </output> - <output name="outrdat" value="matrix2.rdat" compare="sim_size" delta="500" /> + <output name="outrdat" value="matrix2.rdat" compare="sim_size" delta="40000" /> <output name="outpdf" value="matrix2.pdf" compare="sim_size" delta="100" /> <output name="outassignments" > <assert_contents> @@ -214,7 +214,7 @@ * The initial and final clustering (as determined using random forest) * For each of the most differentially expressed genes in each cluster -The tool requires the RData input from the previous filtering / normalisation / confounder removal step to work. +The tool requires the RDS input from the previous filtering / normalisation / confounder removal step to work. ]]> |