| Previous changeset 19:4e97cb4310ac (2016-10-21) Next changeset 21:1efd84f03444 (2016-10-21) |
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Commit message:
Uploaded |
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added:
beagle_phase.sh |
| b |
| diff -r 4e97cb4310ac -r f9a3d6a36ca5 beagle_phase.sh --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/beagle_phase.sh Fri Oct 21 06:31:27 2016 -0400 |
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| @@ -0,0 +1,17 @@ +#!/bin/bash + + +vcf_input=$1 +out="out_phased" + +directory=`dirname $0` + +mkdir tmpdir$$ + +cp -rf $vcf_input tmpdir$$/input.vcf + + +java -jar $directory/beagle.jar gt=$vcf_input out=$out + + +rm -rf tmpdir$$ \ No newline at end of file |