Previous changeset 4:a6198fc1116f (2016-02-25) Next changeset 6:d4b5942ed347 (2016-02-25) |
Commit message:
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty |
modified:
get_length_and_gc_content.r |
b |
diff -r a6198fc1116f -r f9b964d1d386 get_length_and_gc_content.r --- a/get_length_and_gc_content.r Thu Feb 25 05:45:51 2016 -0500 +++ b/get_length_and_gc_content.r Thu Feb 25 05:47:38 2016 -0500 |
[ |
@@ -14,9 +14,9 @@ parser <- OptionParser(usage = "%prog [options] file", option_list=option_list) args = parse_args(parser) -GTFfile = args.gtf -FASTAfile = args.fasta -output = args.output +GTFfile = args$gtf +FASTAfile = args$fasta +output = args$output #Load the annotation and reduce it GTF <- import.gff(GTFfile, format="gtf", genome=NA, asRangedData=F, feature.type="exon") |