| Previous changeset 23:dba3c47e1798 (2018-12-12) Next changeset 25:1cfc579079a6 (2019-01-29) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 309588eae8df8baffaf49fc00fb0d28106109ddf |
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modified:
jbrowse.py macros.xml |
| b |
| diff -r dba3c47e1798 -r fa30df9b79c2 jbrowse.py --- a/jbrowse.py Wed Dec 12 02:54:31 2018 -0500 +++ b/jbrowse.py Wed Jan 16 03:28:29 2019 -0500 |
| [ |
| @@ -872,7 +872,7 @@ 'hideGenomeOptions': root.find('metadata/general/hideGenomeOptions').text, }, 'plugins': [{ - 'location': 'https://cdn.rawgit.com/TAMU-CPT/blastview/97572a21b7f011c2b4d9a0b5af40e292d694cbef/', + 'location': 'https://cdn.jsdelivr.net/gh/TAMU-CPT/blastview@97572a21b7f011c2b4d9a0b5af40e292d694cbef/', 'name': 'BlastView' }], 'plugins_python': ['BlastView'], @@ -882,32 +882,32 @@ if plugins['GCContent'] == 'True': extra_data['plugins_python'].append('GCContent') extra_data['plugins'].append({ - 'location': 'https://cdn.rawgit.com/elsiklab/gccontent/5c8b0582ecebf9edf684c76af8075fb3d30ec3fa/', + 'location': 'https://cdn.jsdelivr.net/gh/elsiklab/gccontent@5c8b0582ecebf9edf684c76af8075fb3d30ec3fa/', 'name': 'GCContent' }) if plugins['Bookmarks'] == 'True': extra_data['plugins'].append({ - 'location': 'https://cdn.rawgit.com/TAMU-CPT/bookmarks-jbrowse/5242694120274c86e1ccd5cb0e5e943e78f82393/', + 'location': 'https://cdn.jsdelivr.net/gh/TAMU-CPT/bookmarks-jbrowse@5242694120274c86e1ccd5cb0e5e943e78f82393/', 'name': 'Bookmarks' }) if plugins['ComboTrackSelector'] == 'True': extra_data['plugins_python'].append('ComboTrackSelector') extra_data['plugins'].append({ - 'location': 'https://cdn.rawgit.com/Arabidopsis-Information-Portal/ComboTrackSelector/52403928d5ccbe2e3a86b0fa5eb8e61c0f2e2f57', + 'location': 'https://cdn.jsdelivr.net/gh/Arabidopsis-Information-Portal/ComboTrackSelector@52403928d5ccbe2e3a86b0fa5eb8e61c0f2e2f57', 'icon': 'https://galaxyproject.org/images/logos/galaxy-icon-square.png', 'name': 'ComboTrackSelector' }) if plugins['theme'] == 'Minimalist': extra_data['plugins'].append({ - 'location': 'https://cdn.rawgit.com/erasche/jbrowse-minimalist-theme/d698718442da306cf87f033c72ddb745f3077775/', + 'location': 'https://cdn.jsdelivr.net/gh/erasche/jbrowse-minimalist-theme@d698718442da306cf87f033c72ddb745f3077775/', 'name': 'MinimalistTheme' }) elif plugins['theme'] == 'Dark': extra_data['plugins'].append({ - 'location': 'https://cdn.rawgit.com/erasche/jbrowse-dark-theme/689eceb7e33bbc1b9b15518d45a5a79b2e5d0a26/', + 'location': 'https://cdn.jsdelivr.net/gh/erasche/jbrowse-dark-theme@689eceb7e33bbc1b9b15518d45a5a79b2e5d0a26/', 'name': 'DarkTheme' }) |
| b |
| diff -r dba3c47e1798 -r fa30df9b79c2 macros.xml --- a/macros.xml Wed Dec 12 02:54:31 2018 -0500 +++ b/macros.xml Wed Jan 16 03:28:29 2019 -0500 |
| b |
| @@ -13,7 +13,7 @@ </requirements> </xml> <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token> - <token name="@WRAPPER_VERSION@">galaxy2</token> + <token name="@WRAPPER_VERSION@">galaxy3</token> <xml name="stdio"> <stdio> <exit_code range="1:"/> |