Repository 'anndata_import'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/anndata_import

Changeset 11:fb9e030ffae4 (2022-06-22)
Previous changeset 10:55e35e9203cf (2022-05-07) Next changeset 12:93dd15e13e6a (2023-11-12)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 7decaee045e15bd71deb3bc46b81aa39caf1ed31
modified:
import.xml
loompy_to_tsv.py
macros.xml
b
diff -r 55e35e9203cf -r fb9e030ffae4 import.xml
--- a/import.xml Sat May 07 19:54:26 2022 +0000
+++ b/import.xml Wed Jun 22 07:21:48 2022 +0000
b
@@ -1,4 +1,4 @@
-<tool id="anndata_import" name="Import Anndata and loom" version="@VERSION@+@GALAXY_VERSION@" profile="20.09">
+<tool id="anndata_import" name="Import Anndata and loom" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.09">
     <description>from different format</description>
     <macros>
         <import>macros.xml</import>
b
diff -r 55e35e9203cf -r fb9e030ffae4 loompy_to_tsv.py
--- a/loompy_to_tsv.py Sat May 07 19:54:26 2022 +0000
+++ b/loompy_to_tsv.py Wed Jun 22 07:21:48 2022 +0000
[
@@ -20,7 +20,7 @@
 allrows = []
 
 # Build background info for all attributes and layers
-loompyfile = loompy.connect(file)
+loompyfile = loompy.connect(file, mode="r")
 row_attributes = loompyfile.ra.keys()  # List of row attributes
 for row in row_attributes:  # Each list represents rownames for row_attributes
     c_row = loompyfile.ra[row]
b
diff -r 55e35e9203cf -r fb9e030ffae4 macros.xml
--- a/macros.xml Sat May 07 19:54:26 2022 +0000
+++ b/macros.xml Wed Jun 22 07:21:48 2022 +0000
b
@@ -1,9 +1,9 @@
 <macros>
-    <token name="@VERSION@">0.7.5</token>
-    <token name="@GALAXY_VERSION@">galaxy0</token>
+    <token name="@TOOL_VERSION@">0.7.5</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="@VERSION@">anndata</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">anndata</requirement>
             <requirement type="package" version="2.0.17">loompy</requirement>
             <yield />
         </requirements>