| Previous changeset 22:609ecf4d57fe (2016-04-14) Next changeset 24:f0410eccdc33 (2016-04-18) |
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ProHits_DotPlot_Generator.xml |
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| diff -r 609ecf4d57fe -r fbc857f87f52 ProHits_DotPlot_Generator.xml --- a/ProHits_DotPlot_Generator.xml Thu Apr 14 16:37:38 2016 -0400 +++ b/ProHits_DotPlot_Generator.xml Mon Apr 18 10:49:29 2016 -0400 |
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| @@ -42,21 +42,29 @@ </test> </tests> <help> -**Running ProHits DotPlot** - -This runs the biclustering version of the DotPlot tool found at http://prohitstools.mshri.on.ca/. A more interactive version can be found at http://prohits-viz.lunenfeld.ca/. This script will take a long time to run. +Prohits Dotplot +-------------- -INPUTS: +This tool runs the biclustering version of the DotPlot tool found +at http://prohitstools.mshri.on.ca/. A more interactive version +can be found at http://prohits-viz.lunenfeld.ca/. Depending on +your Galaxy distribution, this tool may take a few minutes to run. -Saint Output: SAINTexpress generated "list.txt" file. +**1) SAINT Output File** + +SAINTexpress generated *list.txt* file -Primary False Discovery Rate +**2) False Discovery Rate 1** -Secondary False Discovery Rate +Primary FDR cutoff in range 0-1 (default 0.01) + +**3) False Discovery Rate 2** -Maximum Spectral Count +Secondary FDR cutoff; must be higher than the primary (default 0.025) ------- +**4) Maximum Spectral Count** + +Maximum spectral count to visualize (default 50) **Please cite** |