Repository 'hisat2'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/hisat2

Changeset 19:fbf98f24097b (2018-04-10)
Previous changeset 18:764756ab0eb5 (2018-03-26) Next changeset 20:6ab42baa56e9 (2018-05-30)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hisat2 commit 9bbf35d7f47e5ab6b78248c9907b71446d4e7b0c
modified:
hisat2.xml
b
diff -r 764756ab0eb5 -r fbf98f24097b hisat2.xml
--- a/hisat2.xml Mon Mar 26 17:23:52 2018 -0400
+++ b/hisat2.xml Tue Apr 10 18:41:43 2018 -0400
[
@@ -14,6 +14,8 @@
     </stdio>
     <version_command>hisat2 --version</version_command>
     <command><![CDATA[
+## Use pipefail if available to quit with first non-zero exit code
+set -o | grep -q pipefail && set -o pipefail;
 
 ## Prepare HISAT2 index