| Previous changeset 67:5e67fa9f807b (2017-05-11) Next changeset 69:23e9c26c3334 (2017-05-11) |
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Commit message:
Uploaded |
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modified:
getGEO/getGEO.R |
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added:
getGEO/test-data/._input.txt getGEO/test-data/input.txt |
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removed:
getGEO/test-data/._input.csv getGEO/test-data/input.csv |
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| diff -r 5e67fa9f807b -r fc93085430a8 getGEO/getGEO.R --- a/getGEO/getGEO.R Thu May 11 10:03:02 2017 -0400 +++ b/getGEO/getGEO.R Thu May 11 11:16:23 2017 -0400 |
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| @@ -1,9 +1,3 @@ -require("BiocGenerics", quietly = TRUE) -require("data.table", quietly = TRUE) -require("GEOquery", quietly = TRUE) -require("rtracklayer", quietly = TRUE) -require("FDb.InfiniumMethylation.hg19", quietly = TRUE) - options("download.file.method.GEOquery"="wget") options(warn = -1) |
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| diff -r 5e67fa9f807b -r fc93085430a8 getGEO/test-data/._input.csv |
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| Binary file getGEO/test-data/._input.csv has changed |
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| diff -r 5e67fa9f807b -r fc93085430a8 getGEO/test-data/._input.txt |
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| Binary file getGEO/test-data/._input.txt has changed |
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| diff -r 5e67fa9f807b -r fc93085430a8 getGEO/test-data/input.csv --- a/getGEO/test-data/input.csv Thu May 11 10:03:02 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,4 +0,0 @@ -ID,Phenotype -GSM1247787,melanoma -GSM1247784,melanoma -GSM1247733,healthy |
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| diff -r 5e67fa9f807b -r fc93085430a8 getGEO/test-data/input.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/getGEO/test-data/input.txt Thu May 11 11:16:23 2017 -0400 |
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| @@ -0,0 +1,4 @@ +ID,Phenotype +GSM1247787,melanoma +GSM1247784,melanoma +GSM1247733,healthy |