Repository 'deeptools_plot_correlation'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_correlation

Changeset 28:fd408d755394 (2023-05-19)
Previous changeset 27:e44978659400 (2022-02-11) Next changeset 29:2c66e43f1c86 (2023-06-01)
Commit message:
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit e7e3025eb4fffe5deb34c12a6d402d79241d9ed5
modified:
deepTools_macros.xml
test-data/multiBigwigSummary_result1.npz
added:
test-data/bigwigAverage2.bw
test-data/multiBigwigSummary_result2.npz
test-data/multiBigwigSummary_result2.tabular
test-data/test_compated.bw
test-data/test_half.bw
b
diff -r e44978659400 -r fd408d755394 deepTools_macros.xml
--- a/deepTools_macros.xml Fri Feb 11 15:44:45 2022 +0000
+++ b/deepTools_macros.xml Fri May 19 08:29:53 2023 +0000
[
@@ -368,7 +368,6 @@
     <xml name="pseudocount">
         <param argument="--pseudocount" type="text" value="1 1" label="Pseudocount" help="Small number to avoid dividing by zero. You can specify separate values for the pseudocount added to the numerator and denominator by providing two values separated by a space."/>
     </xml>
-
     <token name="@REFERENCES@">
 
 .. class:: infomark
@@ -483,7 +482,7 @@
     <token name="@multiple_input_bams@">
 <![CDATA[
         #if $custom_sample_labels_conditional.custom_labels_select == "Yes":
-            #set custom_labels=labels
+            #set custom_labels=$custom_sample_labels_conditional.labels
         #end if
         #set files=[]
         #set labels=[]
@@ -498,7 +497,7 @@
                     ln -s '${bamfile.metadata.cram_index}' './${counter}.bam.crai' &&
                 #end if
                 #silent $files.append("'%s.bam'" % $counter)
-                #silent $labels.append("'%s'" % identifier)
+                #silent $labels.append("'%s'" % $identifier)
             #end for
         #else:
             #for $counter, $f in enumerate($multibam_conditional.multibam_repeats):
@@ -522,7 +521,7 @@
     <token name="@multiple_input_bigwigs@">
 <![CDATA[
         #if $custom_sample_labels_conditional.custom_labels_select == "Yes":
-            #set custom_labels=labels
+            #set custom_labels=$custom_sample_labels_conditional.labels
         #end if
         #set files=[]
         #set labels=[]
b
diff -r e44978659400 -r fd408d755394 test-data/bigwigAverage2.bw
b
Binary file test-data/bigwigAverage2.bw has changed
b
diff -r e44978659400 -r fd408d755394 test-data/multiBigwigSummary_result1.npz
b
Binary file test-data/multiBigwigSummary_result1.npz has changed
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diff -r e44978659400 -r fd408d755394 test-data/multiBigwigSummary_result2.npz
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/multiBigwigSummary_result2.npz Fri May 19 08:29:53 2023 +0000
b
@@ -0,0 +1,121 @@
+#'chr' 'start' 'end' 'sample1' 'sample2'
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b
diff -r e44978659400 -r fd408d755394 test-data/multiBigwigSummary_result2.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/multiBigwigSummary_result2.tabular Fri May 19 08:29:53 2023 +0000
b
@@ -0,0 +1,121 @@
+#'chr' 'start' 'end' 'sample1' 'sample2'
+ch1 0 10 0.0 0.0
+ch1 10 20 0.0 0.0
+ch1 20 30 0.0 0.0
+ch1 30 40 0.0 0.0
+ch1 40 50 0.0 0.0
+ch1 50 60 0.0 0.0
+ch1 60 70 0.0 0.0
+ch1 70 80 0.0 0.0
+ch1 80 90 0.0 0.0
+ch1 90 100 0.0 0.0
+ch1 100 110 2.0 2.0
+ch1 110 120 2.0 2.0
+ch1 120 130 1.0 1.0
+ch1 130 140 0.0 0.0
+ch1 140 150 0.0 0.0
+ch1 150 160 0.0 0.0
+ch1 160 170 0.0 0.0
+ch1 170 180 0.0 0.0
+ch1 180 190 0.0 0.0
+ch1 190 200 0.0 0.0
+ch1 200 210 0.0 0.0
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+ch1 220 230 0.0 0.0
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b
diff -r e44978659400 -r fd408d755394 test-data/test_compated.bw
b
Binary file test-data/test_compated.bw has changed
b
diff -r e44978659400 -r fd408d755394 test-data/test_half.bw
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Binary file test-data/test_half.bw has changed