| Previous changeset 2:014a21767ac4 (2019-09-17) Next changeset 4:184dfd9e113d (2020-01-09) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit f04fe62fb7dbad75e597da8cd674cfe36ed3d80a" |
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modified:
circos.xml macros.xml tableviewer.xml |
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| diff -r 014a21767ac4 -r fd59d783248a circos.xml --- a/circos.xml Tue Sep 17 16:54:57 2019 -0400 +++ b/circos.xml Mon Dec 02 08:14:29 2019 -0500 |
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| @@ -62,13 +62,13 @@ #end if #end if -mv '$circos_conf' circos/conf/circos.conf && -mv '$ticks_conf' circos/conf/ticks.conf && -mv '$ideogram_conf' circos/conf/ideogram.conf && -mv '$data_conf' circos/conf/data.conf && -mv '$highlight_conf' circos/conf/highlight.conf && -mv '$links_conf' circos/conf/links.conf && -mv '$test_case_conf' circos/conf/galaxy_test_case.json && +cp '$circos_conf' circos/conf/circos.conf && +cp '$ticks_conf' circos/conf/ticks.conf && +cp '$ideogram_conf' circos/conf/ideogram.conf && +cp '$data_conf' circos/conf/data.conf && +cp '$highlight_conf' circos/conf/highlight.conf && +cp '$links_conf' circos/conf/links.conf && +cp '$test_case_conf' circos/conf/galaxy_test_case.json && ## Highlights #for $hi, $data in enumerate($sec_highlight.data): @@ -86,13 +86,11 @@ #end for #if $outputs.tar == "yes" - tar cvfz circos.tar.gz circos >/dev/null -#else - echo '' + tar -czf circos.tar.gz circos && #end if #if $outputs.svg == "yes" or $outputs.png == "yes": - && circos -conf circos/conf/circos.conf -noparanoid + circos -conf circos/conf/circos.conf -noparanoid #end if ]]></command> <configfiles> |
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| diff -r 014a21767ac4 -r fd59d783248a macros.xml --- a/macros.xml Tue Sep 17 16:54:57 2019 -0400 +++ b/macros.xml Mon Dec 02 08:14:29 2019 -0500 |
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| @@ -2,7 +2,7 @@ <macros> <token name="@CIRCOS_VERSION@">0.69.8</token> - <token name="@WRAPPER_VERSION@">@CIRCOS_VERSION@+galaxy1</token> + <token name="@WRAPPER_VERSION@">@CIRCOS_VERSION@+galaxy2</token> <xml name="requirements"> <requirements> @@ -12,6 +12,7 @@ <requirement type="package" version="1.70">biopython</requirement> <requirement type="package" version="0.3.13">pybigwig</requirement> <requirement type="package" version="0.23">circos-tools</requirement> + <requirement type="package" version="1.29">tar</requirement> <yield /> </requirements> </xml> |
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| diff -r 014a21767ac4 -r fd59d783248a tableviewer.xml --- a/tableviewer.xml Tue Sep 17 16:54:57 2019 -0400 +++ b/tableviewer.xml Mon Dec 02 08:14:29 2019 -0500 |
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| @@ -14,7 +14,7 @@ make-conf -dir circos/data < tmp && -tar cvfz circos.tar.gz circos && +tar -czf circos.tar.gz circos && cd circos && circos -conf etc/circos.conf && mv circos.png ../ && |