| Previous changeset 1:7355bbf5e05f (2018-06-10) |
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Commit message:
planemo upload commit c95f14a2264c02a4d9ff1f629a450ba2ea73b109 |
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modified:
barrnap.xml |
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| diff -r 7355bbf5e05f -r fe48aa4ccd5e barrnap.xml --- a/barrnap.xml Sun Jun 10 03:26:56 2018 -0400 +++ b/barrnap.xml Thu Jun 23 07:44:02 2022 +0000 |
| [ |
| @@ -1,10 +1,16 @@ -<tool id="barrnap" name="barrnap" version="1.2.1"> +<tool id="barrnap" name="barrnap" version="1.2.2"> <description>Locate ribosomal RNA's in a fasta file. (GFF output)</description> + <xrefs> + <xref type="bio.tools">barrnap</xref> + </xrefs> <requirements> <requirement type="package" version="0.9">barrnap</requirement> </requirements> <version_command>barrnap --version</version_command> <command detect_errors="exit_code"><![CDATA[ + ## symlink fasta because tool generates .fai + ln -s '$fasta_file' query.fa && + barrnap --quiet --threads \${GALAXY_SLOTS:-1} @@ -18,7 +24,7 @@ --outseq '$fasta_out' #end if --kingdom $kingdom - '$fasta_file' + query.fa > '$gff' ]]> </command> |