| Previous changeset 7:53a7856cfafc (2025-07-15) |
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Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__dada2 commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b |
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modified:
qiime2__dada2__denoise_paired.xml test-data/denoise_paired.test0.demux-paired.qza test-data/denoise_single.test0.demux-single.qza |
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| diff -r 53a7856cfafc -r ff047d5ca265 qiime2__dada2__denoise_paired.xml --- a/qiime2__dada2__denoise_paired.xml Tue Jul 15 21:48:36 2025 +0000 +++ b/qiime2__dada2__denoise_paired.xml Sat Nov 01 17:10:33 2025 +0000 |
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| @@ -6,17 +6,17 @@ --> <!-- This tool was automatically generated by: - q2galaxy (version: 2025.7.0) + q2galaxy (version: 2025.10.0) for: - qiime2 (version: 2025.7.0) + qiime2 (version: 2025.10.0) --> -<tool name="qiime2 dada2 denoise-paired" id="qiime2__dada2__denoise_paired" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 dada2 denoise-paired" id="qiime2__dada2__denoise_paired" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause"> <description>Denoise and dereplicate paired-end sequences</description> <xrefs> <xref type="bio.tools">qiime2</xref> </xrefs> <requirements> - <container type="docker">quay.io/qiime2/amplicon:2025.7</container> + <container type="docker">quay.io/qiime2/amplicon:2025.10</container> </requirements> <version_command>q2galaxy version dada2</version_command> <command detect_errors="exit_code">q2galaxy run dada2 denoise_paired '$inputs'</command> @@ -60,6 +60,7 @@ <data name="table" format="qza" label="${tool.name} on ${on_string}: table.qza" from_work_dir="table.qza"/> <data name="representative_sequences" format="qza" label="${tool.name} on ${on_string}: representative_sequences.qza" from_work_dir="representative_sequences.qza"/> <data name="denoising_stats" format="qza" label="${tool.name} on ${on_string}: denoising_stats.qza" from_work_dir="denoising_stats.qza"/> + <data name="base_transition_stats" format="qza" label="${tool.name} on ${on_string}: base_transition_stats.qza" from_work_dir="base_transition_stats.qza"/> </outputs> <tests> <test> @@ -87,6 +88,13 @@ </has_archive_member> </assert_contents> </output> + <output name="base_transition_stats" ftype="qza"> + <assert_contents> + <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml"> + <has_line_matching expression="type: DADA2BaseTransitionStats"/> + </has_archive_member> + </assert_contents> + </output> </test> </tests> <help> @@ -99,7 +107,8 @@ -------- :table.qza: The resulting feature table. :representative_sequences.qza: The resulting feature sequences. Each feature in the feature table will be represented by exactly one sequence, and these sequences will be the joined paired-end sequences. -:denoising_stats.qza: <no description> +:denoising_stats.qza: A table listing per-sample read retention counts and percentages after each stage of the pipeline. +:base_transition_stats.qza: A table listing the transition rates of each ordered pair of nucleotides at each quality score. | |
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| diff -r 53a7856cfafc -r ff047d5ca265 test-data/denoise_paired.test0.demux-paired.qza |
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| Binary file test-data/denoise_paired.test0.demux-paired.qza has changed |
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| diff -r 53a7856cfafc -r ff047d5ca265 test-data/denoise_single.test0.demux-single.qza |
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| Binary file test-data/denoise_single.test0.demux-single.qza has changed |