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Changeset 2:ff658cf87f16 (2019-09-04)

Previous changeset 1:2e811f988e1d (2019-06-12) Next changeset 3:e320ef2d105a (2019-09-05)

Commit message:
Uploaded

modified:
extract_contigs_from_archive.xml

removed:
test_data/seqs.fasta
test_data/single_output.fasta
test_data/single_output.png

diff -r 2e811f988e1d -r ff658cf87f16 extract_contigs_from_archive.xml
--- a/extract_contigs_from_archive.xml Wed Jun 12 08:19:09 2019 -0400
+++ b/extract_contigs_from_archive.xml Wed Sep 04 07:33:42 2019 -0400

@@ -1,6 +1,8 @@
<tool id="extract_contigs" name="Extract contigs from RepeatExplorer2 archive">
   <command detect_errors="exit_code">
     unzip -p ${RepeatExplorer_archive} contigs.fasta  > ${contigs}
+    &&
+    unzip -p -j ${RepeatExplorer_archive} "*.aln"  > ${aln}
   </command>

   <inputs>
@@ -8,6 +10,7 @@
   </inputs>

   <outputs>
-    <data name="contigs" format="fasta" label="contigs from RepeatExplorer clustering - data ${RepeatExplorer_archive.hid}" />
+    <data name="contigs" format="fasta" label="contigs from RepeatExplorer clustering from data ${RepeatExplorer_archive.hid}" />
+    <data name="aln" format="txt" label="contigs from RepeatExplorer clustering in aln format from data ${RepeatExplorer_archive.hid}" />
   </outputs>
</tool>

diff -r 2e811f988e1d -r ff658cf87f16 test_data/seqs.fasta
--- a/test_data/seqs.fasta Wed Jun 12 08:19:09 2019 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b'@@ -1,3000 +0,0 @@\n->ERR215189.32 HWI-ST620_0157:3:1101:4535:2056 1\n-CTGGTCTTTTCATTCTAATACTCTATCCGAGAGTTCTCCGTATTTAGCAAAGCTGTTCCTATCTAACGGAAGGCTCCTGG\n-ATCAAATGACAAAGA\n->ERR215189.43 HWI-ST620_0157:3:1101:10667:2192 1\n-CAACCGTGAGGGTCTGCTGTGATACCACTTGTAACACCCTATCCTCAAAAGTTGCATTGCCCAGCCCTTATGTGGGGCGG\n-GCAAGAATACACATG\n->ERR215189.83 HWI-ST620_0157:3:1101:6983:2487 1\n-CAAAAGTTGTAGAAGGAGATGGCGTGGCCACATCTAATCCCGGAGATGAAGGAGAGGATCCAAGGTGTGCTGCCCCGACA\n-GAATCTGGTGGTGGA\n->ERR215189.264 HWI-ST620_0157:3:1101:15398:3259 1\n-ATTGAATCTGAGTCGCGAGGAACCTTTCCTCGGCGATCCTATCCACCTTCTTGAATCCTTCTTGTCTGCTCACGTCGTCC\n-GGCGATCGTCGGCGG\n->ERR215189.279 HWI-ST620_0157:3:1101:20167:3416 1\n-CTTCAGCTTCTGAGTTGAGAACGTACAATTGTCCCTCTGCGTCCAAACGCAGACGACCATGTCCGACGTGCTTCGGGCTC\n-CCACAGCAGTCGCAG\n->ERR215189.295 HWI-ST620_0157:3:1101:9033:3587 1\n-TGTCACGAATGGCGACGCGTACCACCACTTCCTCCTCGACAGCCAACCCTTTGCGCAGCACCTTTGTAGGCAGGTCGACC\n-GACCGAGCCTTCAGA\n->ERR215189.457 HWI-ST620_0157:3:1101:8995:4637 1\n-CTTGCGACATAGCCTCCTGTAATCCTTAGTGAGTGTTCCGACAATGGAAGTCAATTTCTTTCCATGCCTTGAGCGCCTTC\n-CCTTAGTTGTCGTGG\n->ERR215189.493 HWI-ST620_0157:3:1101:19976:4694 1\n-CTTTAGCATATGATTGCTTAACATATGCATGAACCGTGGATAATTGAACTAGCAACATCTTAATTTTGCAGTCTGATAAA\n-GCTGATGAACCCACT\n->ERR215189.505 HWI-ST620_0157:3:1101:7324:4808 1\n-CAGACGTCAAGGATTGAGACTAATAGACCATCTATCCTGGCTTACTATAGGGCACATCATTTGATCTCCGTTGCTGGCAT\n-GCTGCTTGCTTTATC\n->ERR215189.602 HWI-ST620_0157:3:1101:14342:5350 1\n-CTCCATTCACTAGTTTTCTTTTTTATTAGGACTGCGTTTGCTAATTAGTCGAGGTGCTTACATTCACAGTTGAAACCGGT\n-GCTAAAAGTTTATTT\n->ERR215189.665 HWI-ST620_0157:3:1101:10881:5838 1\n-AAGTTGTATGACCAATGTTACTAATTTCCATACCTGTACCATTGGCCGCATGCACTTGATCACGTCCATTGTACTTGTCA\n-TGAATTGTCATCTTC\n->ERR215189.691 HWI-ST620_0157:3:1101:19026:5948 1\n-CTGCTGCGTATCGGCCGTAGCAACACTGTAGGCGGAATCAGCGGTGACTATCTTGATGTTGTCACCGACCCATTGTACGA\n-GGCATTGGTGCATTG\n->ERR215189.768 HWI-ST620_0157:3:1101:16448:6482 1\n-CGGAAGCTACTACCCGGACAGGGAGGTACTTGTTATTACTCAGAATAACATCCCGGGTACTAGCCAGAACAGAACCCCCA\n-GGCGATTAGCACAAG\n->ERR215189.946 HWI-ST620_0157:3:1101:16942:7437 1\n-CTGTATACCCCTTTGATAAGTTGCTCCTGCGTTTTTTAGTCCGAAGGACATTGTTTTGTAGCAGAAGGCTCCAAAGGGCG\n-TGATGAACGCTGTTT\n->ERR215189.1121 HWI-ST620_0157:3:1101:3988:8508 1\n-GTGGTGGAGGCGGTGGAACATTGACGATGTTTTGCGCAGGTACCTGGGCCTGCATCTCCTCCAAAGCCAGACGAAGTGAT\n-AAGATCTCATCCAAC\n->ERR215189.1175 HWI-ST620_0157:3:1101:9471:8782 1\n-CCCCCTCGGCATGCTTGACAGCAGCAGTTTTCCTCCCCATCCTTGATGTCACGAGCTTCTTCTGTCGCATACGCTCGGGG\n-GCTAAGTGGTGGGAG\n->ERR215189.1300 HWI-ST620_0157:3:1101:12651:9739 1\n-CCAACCACCGGTCTACCCGCGCCTACGCCTCCCTGACGGAGTAGCGCAATGATCGCTGGCGTCACCCCCGGAGTTCTGCA\n-GCACCGCCCGGTTTG\n->ERR215189.1342 HWI-ST620_0157:3:1101:16786:9956 1\n-AATGCACCTGTGTTGCATCGTTTTTCGTGCCGTAACCTGATAGAGTCGGAGTGCCCGATCTTTCGGTGAGTGAAGATAAA\n-TTCGACTTGGTGGAA\n->ERR215189.1366 HWI-ST620_0157:3:1101:8081:10001 1\n-GGCCATCCCATTCAGGACTCCCAGCTTGTCCTGAACCTCCTCCGCAGCCTCAACCCGTGCTTCTCCAACACCGCTAGCTT\n-CTCATCCTTCGCCCA\n->ERR215189.1459 HWI-ST620_0157:3:1101:7970:10656 1\n-CACAAGATATCATACAGAGGAAGTCACTCATCCATGTATGAACTCAGAGTTGCAGGATCCCCAGAGAAGAACAATTACAC\n-ATGCTTACAAGGCTA\n->ERR215189.1464 HWI-ST620_0157:3:1101:10931:10567 1\n-TTCTATCGCCCCGTTCGCTTGCAGGCCGCTAGCCGCCACGCCACCCCAGGCGATGTCCCGTGGCAGCGGACGGGAACGCC\n-GGCCTGAAGCTCCGC\n->ERR215189.1469 HWI-ST620_0157:3:1101:13348:10534 1\n-CGAGTCGAGCGTGTGCTTCTCCGGGCCGCACGGCGGCGCGCGCGTCGTGGTTGAGAGATTCGGTGGAAGCATTCGTACGC\n-AGCCGTGTGTGAAAC\n->ERR215189.1614 HWI-ST620_0157:3:1101:19541:11361 1\n-CCCGCGCGGACTAGACGGGCGAGAGGAATATGGAAAGAGGGCCCTTCTGCGAGTATTATTCTCGTCAATCTTGACCGGTC\n-AGGTTCGATCCAACG\n->ERR215189.1677 HWI-ST620_0157:3:1101:9667:11901 1\n-CACGGGGGCCCACAGAGCCCCGGAATCCTACTAAATTTGGCCCGTCGGACCATGAAGCACGAAGCCACTGACGGCCTGCT\n-CCTACTCCATCTCTC\n->ERR215189.1699 HWI-ST620_0157:3:1101:19789:11774 1\n-AGATATTAGGTCAGTCATGTTATGGTATGGCACCTACCATTCGTAGATGCGCTGAAGCCCAGCAGTGGACACCTTGTTCC\n-AGTAGCTTGGGTCTT\n->ERR215189.1732 HWI-ST620_0157:3:1101:10974:12002 1\n-GTTCTCGTGTTAGCCCTGGTAGCAGCATTTGAGGAGAACCCTGTGTGCGCAGAGAAGTGTTCCCTTTGGTTGGAACTGCC\n-TGGGGAGACGGTAGA\n->ERR215189.1825 HWI-ST620_0157:3:1101:16657:12727 1\n-CTCTCGTGGATCTTGGCGT'..b'TTGCGCTCCTCGGGG\n-CCGTGGCTGAGCGCG\n->ERR215189.73346 HWI-ST620_0157:3:1103:6211:28776 1\n-CATCGGGATCCTACCTCGATCTTGATGATTCCCAGCTCCAGAACATTGATGTGAATCTTCCTCACAAGGTGATCACGCCA\n-GTTAGGGCTTAGCTA\n->ERR215189.73367 HWI-ST620_0157:3:1103:18533:28811 1\n-GTATGGGGCCCCCGCCTAAGCGCTACCCTGAGATCGGACTCGAAGGGTAGTAAGACATCCCTTAGGGATGCCACTGTAAG\n-GACAAGAAACATAGC\n->ERR215189.73381 HWI-ST620_0157:3:1103:5668:29236 1\n-CATGTGTGTAAATCATTCGTGACCTGCGTGTCGCGCGTACGGCAACACGGCAGGAGCCATATGTGTTGTCACTTTATTGT\n-ATTTAATGGTCTGCG\n->ERR215189.73426 HWI-ST620_0157:3:1103:2984:29480 1\n-CCTCCTCCTCCGCTGAGTTCGCTCGCCCGACCCAATTCCCGACGGCGATCGATTTCCAAACCAAAACCAAACACCTCCCC\n-CGCGGCCGCGGGCCC\n->ERR215189.73449 HWI-ST620_0157:3:1103:12258:29264 1\n-GGTGTTTGCCCTGAAAAGAAAACGCTGTCGCCGCCGCCGTCTCCGGCCGCCCCTCGCTTGCATCCCCTTCCTCCACACTC\n-CGCAGCACGCCGCCG\n->ERR215189.73528 HWI-ST620_0157:3:1103:9257:29897 1\n-TGGCTCTACGAACTTGATTGAAGAGTGGCCGCACAAGAGTTTTGAAATTTGAATTTCTGGCCATACGTTTGCAGAAATAA\n-TCTGTACGGCGCCTT\n->ERR215189.73570 HWI-ST620_0157:3:1103:6153:30149 1\n-AACACCAGAATGGGAGCAATCAATCAACCTAAGAGCAATGACTCTCTTCTCTAATTCCCAATCAGCAGAAACAAAATGTG\n-CAACAATACTAAGGT\n->ERR215189.73604 HWI-ST620_0157:3:1103:4311:30383 1\n-ATGATGCTCAAGGATTTCGAAGGCAAGGTGTCAAACGCTCGTGGCGCTCTCTGCGTCGACCTCACCATCGGCAGTAAGAT\n-CCTTCCTACCATGCT\n->ERR215189.73609 HWI-ST620_0157:3:1103:9677:30394 1\n-AAATTTCATTGTACCACATCTAGTATGCTTATAATGTGCTTGCTTAGCCTTTCAATTGTTTAGATTAAATTTTTACTCTT\n-GATATATATCTACTA\n->ERR215189.73692 HWI-ST620_0157:3:1103:19251:30711 1\n-GTACTGCTTGCAGTTTCTCTTCCAGTGACCAAGTTCATGACAGTAAAAGCACTCTTTATCTGGAGCAGGTCCAGCTTTAG\n-CCTTGGGCGCTGGGT\n->ERR215189.73727 HWI-ST620_0157:3:1103:13244:30902 1\n-CGTCTCAAACCAGTGAATGGGGGAAGTCTGAAGCTTAGGCTCCTTTGCTATTGTTAACCTAAGCTTAGGGGCGTGTTTTC\n-CTGATTCAAATCAAA\n->ERR215189.73789 HWI-ST620_0157:3:1103:18523:31141 1\n-AACTTTTTGGTGACGTCAGCGGACGAGTGCCAGAAGAAGCAGAGGAAGCCTTGGCGCCGGCCGCATACATCGAGTCGATG\n-AGGATTCCGGTCTTC\n->ERR215189.73808 HWI-ST620_0157:3:1103:7321:31275 1\n-CGTGCGCACGGTCCTCCTGCACCACCTCGTCTAAAGCGGTCGTCCACATCTCAACCCACTGAATCATCCTCGGAGCCCAC\n-TAGACCCCCAGCCCA\n->ERR215189.73833 HWI-ST620_0157:3:1103:19728:31401 1\n-ATGATAGTAGCTTAGTGGCTGACTGGAACTTGGCATGGTCAGGTATAAAACTGTAAAAGGTCTACGGTACCATGTGACAT\n-GCTACATTGGCGTGC\n->ERR215189.73908 HWI-ST620_0157:3:1103:14001:31835 1\n-GATCGCGCACATGTGTATGTCACCATCAGGCACCACCAACCTAGCTCCTCGCGATCTCTAGCTGCTTCCACGCACCAAGA\n-GATCACACTGCACTA\n->ERR215189.73928 HWI-ST620_0157:3:1103:20497:31750 1\n-GTACACTATCACCCTGGCAAGGCCAATGTGGTGGCCGACGCTCTTAGCCACAAGCCCTGTTGCAACTGCTTGTTGGCAAC\n-AACCTTCACCGAAAC\n->ERR215189.74174 HWI-ST620_0157:3:1103:21108:33384 1\n-TGCAAAATTGCTTCATCATTATGCCTGTGGCCTTTTTCTTAAGCAGACCACGGTATCTTAAAACCTTGAAGCTGAATACT\n-ACGTTTTTTTAAGGG\n->ERR215189.74267 HWI-ST620_0157:3:1103:12391:33904 1\n-GAGGCTGTGCTCAATGATTTCCCTGTCCACCCCCTTGAGATCACCTGCAGACCAAGCAAAGATGTCTTCGTTCTTGTTGA\n-GGCACTCGACGAGGT\n->ERR215189.74547 HWI-ST620_0157:3:1103:7013:35633 1\n-AAAGCTATACAAATTATGGATGTGTTACTTCCTGTGATAAATTCTTGTATCATCTACTGAACCAGGAAATGATACAAATG\n-ACATTCGGGATCTCT\n->ERR215189.74592 HWI-ST620_0157:3:1103:6438:35991 1\n-GGTAAACTTGCGACATAGCCTCCTGTAATCCTTAGTGAGTGTTCCGACAATGGAAGTCAATTTCTTTCCATGCCTTGAGC\n-GCCTTCCCTTAGTTG\n->ERR215189.74609 HWI-ST620_0157:3:1103:13206:35943 1\n-CCCTCCCCATGATCCAAAACCCAAATCCCCTCCTCTGCACCCATCTCGTCGCCACCTCGACCTCTACCCGCAGCGACCTC\n-ACCACCACGCCACTC\n->ERR215189.74663 HWI-ST620_0157:3:1103:16554:36157 1\n-GGCTCTGCACTCCACCGTGGCGTTGCGTTGCCAAGCCATGCCATCGCCACTAGTGGATGCTAAGGGTGCGTTTAGTTTCA\n-GGACTGAAGTGGGAC\n->ERR215189.74818 HWI-ST620_0157:3:1103:2734:37008 1\n-GATCTTGCCTTTTCCTTGTGTGGGCGCGCGTGCACAGGTTGGGAGATGGTCGCGCGTGTCGTGCTCGCTGTCCAACGAAG\n-ATCGGAAGAGCGGTT\n->ERR215189.74842 HWI-ST620_0157:3:1103:13395:37042 1\n-CCATGACTATTGCATTTGATGATTGTTTTCTTGGTGTGGAGATCCTGTTGGGGAAATCACGGGCCGAGGGTCCTGGAGGA\n-CCTCACCGTGGAATC\n->ERR215189.74897 HWI-ST620_0157:3:1103:17016:37406 1\n-ATCTCACGTAACCAAAACTTGTTTATACATTGACAGAGAAGAAGAAAAGGAAAAATAAACTACACCACATCTCAACAACA\n-CACGGGCAGTAAAGC\n->ERR215189.74951 HWI-ST620_0157:3:1103:8040:37766 1\n-GCGCAAATCTAGGACCAACACACGAACGCACTCGAACGTGCAGCATGTGGAGCCGCTCCTTGCAGCACCTCTACGAGATC\n-CAAGTCAGACTAGTT\n'

diff -r 2e811f988e1d -r ff658cf87f16 test_data/single_output.fasta
--- a/test_data/single_output.fasta Wed Jun 12 08:19:09 2019 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b'@@ -1,267832 +0,0 @@\n->ERR215189.1 HWI-ST620_0157:3:1101:1659:1941/1\n-GTGAGGAGTAGTCATCGGCCGCCAACTGATCCTGGAGTGAAGTGTGTCTCGACCCTGTCCTCAATTCCCATGGTAGTACCGCCTCGTGACCATAC\n->ERR215189.1 HWI-ST620_0157:3:1101:1659:1941/2\n-CCGATCAAGGAACGATGTTTACGTCAGGAGAATTCGAAGAGTTCACGGCCGATATGGGAATCAAATTATTAAACTCCTCTCCGTACTATGCCCAA\n->ERR215189.2 HWI-ST620_0157:3:1101:1914:1875/1\n-ATATGCTTAAACTCAGCGGGTAGTCCCGTCTGACCTGGGGTCGCGGTCCGAGCGCCTAAACGCTTCGGTCGTGTATGGGTCCTTGAGGCCAATAA\n->ERR215189.2 HWI-ST620_0157:3:1101:1914:1875/2\n-AAGTTTGGGCTGCCGGCATAACTTGTCGGGCACCGCACGTGGTGGGCGACATCTAGTTGTTCTCGGTGCAGTGTCCTGGCATGCAGCTGGCTTAT\n->ERR215189.3 HWI-ST620_0157:3:1101:2032:1928/1\n-ATCTGGGGCCAACCTCTTGGTTTGGGGCCGGTATGTGCACTTGGAGGGCTCGGGGCGGCCGGGGTTGGAGAGGGGAGAGCACGATGGAGGGCAGT\n->ERR215189.3 HWI-ST620_0157:3:1101:2032:1928/2\n-CTGCCGCCGCCCCTCTTTCCTCCCCTGCGCCAAGCCTGCCGCAGCCCCCGGTGACGAGGACCTCAGCGATAGTCCAGTTCCCCTCTTGCGACGAT\n->ERR215189.4 HWI-ST620_0157:3:1101:2535:1844/1\n-AATACCCGAAATGCATGCCGCCTCACATTTCCGCATACGCAGTCTTATTACTAGTACTGGTAGTAGCAGTAGTAGGACTGCAGGAGACCTGCAGC\n->ERR215189.4 HWI-ST620_0157:3:1101:2535:1844/2\n-CGGACAGGCTAGCCAGGCAAAGTCATTAAAGGCCAACGACGACGACGACGTGGGCCGTGGCCGAGTCGCACGTTGGTAGCTGGGCCGTACCGAGG\n->ERR215189.6 HWI-ST620_0157:3:1101:3004:1999/1\n-ATTTTGTTAAGGCCCGACACTGGTAGTGTTCGTGATCAAGTGTTTGAAAGTACTAATCTCATACCTAGTATGGGATGGGGAAGCCTAGTACCTGA\n->ERR215189.6 HWI-ST620_0157:3:1101:3004:1999/2\n-CTAATCTCACGACATCCGCGCACCACAAGGGTTGCTTCCTGTGTCGGCCGTCCCCATCAATTCCCAGGCACGTGTCAGGTCCAAACTTCCCTTGG\n->ERR215189.7 HWI-ST620_0157:3:1101:3673:1834/1\n-GCCCACCGACGGGTGGTCCTCTGGCCAATGGGCCCCGCGACGCAGCAGCTCTGTACGTGGCGGCCCCGGGTGCGCGGAGAGGGGCTCATAAATTT\n->ERR215189.7 HWI-ST620_0157:3:1101:3673:1834/2\n-GTCAGAAGACGCACGGACGCAAAGGTGCGAGCGCGAGTGGCACAAACACGTTTCCCTCCGTCCTCCCGCGCGCCCCACCGGAAAAGTCCAGACCC\n->ERR215189.8 HWI-ST620_0157:3:1101:4115:1913/1\n-AGTGAATTGAAGGCCCAGATGAAATCTGGGTTATTTCTTAATGAACATGAGGTTTGTGCTACTCAAGTTCTAATTCATTTGCTTAAAGCGTTATT\n->ERR215189.8 HWI-ST620_0157:3:1101:4115:1913/2\n-TGCTTTTTGTCATGTGTGGATACACTAAATCCAGATATGTACAGCTAAGACATGTTAAAATAAAAAATTTACATTAGTTTATGATTTATTAAATT\n->ERR215189.9 HWI-ST620_0157:3:1101:5855:1853/1\n-CTAACTTCCAGCACTTCACCACGTGTATCATATGTGTGCCGAGTTCCGCATCACGAGTATGCGAGGGTTGATAGGGAGTTCTATTCAAAGGACCC\n->ERR215189.9 HWI-ST620_0157:3:1101:5855:1853/2\n-CCCTTCGTGCCAGCACTCACGAAAGCGTCCCCAAGCATTACCGTTCACTATAGAAACGACACTCATGCATTTAACGCTGCATGGACAGCACAACA\n->ERR215189.10 HWI-ST620_0157:3:1101:7671:1854/1\n-GATCGTGTTACTAACATGTAGTGCCTAAAAAATTACAAAATGTAGGAAAGGCATAATCATTGGTGGATATTGCGCCCGGGTATATTCGGAATCAT\n->ERR215189.10 HWI-ST620_0157:3:1101:7671:1854/2\n-CGAAACATTGTAAGAAAGAGTTAATAGCGACAAATATCGAACCCGAGGGAGTACGTTACTACTGAAATGCAACGACGAATACACTTGAGCCAAAA\n->ERR215189.11 HWI-ST620_0157:3:1101:7883:1898/1\n-AGCACCGAGCCGGTCGCCACAATGCGTGGCTGATTGCCGCTAAGCCAACATGCAGTTGCAAACGCACTGCCGTACTCTAACCAGTCAACACTCCA\n->ERR215189.11 HWI-ST620_0157:3:1101:7883:1898/2\n-TCTCCGGGTGAAAACCATGCTTGAGTCCTCAGGCGGGCGATGGCGGCGCTTTAGCATCGTTTCTTTGGAGATCATGTTCCGGCCTTTTTCTCGGC\n->ERR215189.12 HWI-ST620_0157:3:1101:8663:1847/1\n-GGCTCCTCCGAGCCCATCGCGACGCGAAGGTAGAAGTCTCCGACCACGCGTTGCGTGCCGTAGCGGATCCACGCGTCGATCTGGTCGGGACGGGG\n->ERR215189.12 HWI-ST620_0157:3:1101:8663:1847/2\n-ATTCATCGGCGGCTTCCTGGACTGGGTGCTCTCCCAGCGCGGCGACGTCGACATGGACTCTCTCCTCATCTCCATGAAGACAGGGGACTGCCCCC\n->ERR215189.13 HWI-ST620_0157:3:1101:8777:1872/1\n-CATCGCCTACGCCGCCCAATAAAGGAGGATGCGCCGCCCGGTCTCCCGCTCGGCCTAGCGGTAGGGGCGTGTAGCCGCGCCTCCTGGTCAGCACG\n->ERR215189.13 HWI-ST620_0157:3:1101:8777:1872/2\n-GAAGGACCGAGCCCCTGGGGTCGCCGCCTTCCCTCCCGGTCTTTGCCTCCTGTCAGCATGACCGCTGAAGGGGGATGGTTGTCGTTGGGCCCCGT\n->ERR215189.14 HWI-ST620_0157:3:1101:9593:1927/1\n-GACTTGATTGATGGTAATAAGCTATCAGTGCTTAGATTCATTACAGCTAGAAGTAGAAATTGCTTAATTTGCTGCTTACGTTATCTGATTTGTGT\n->ERR215189.14 HWI-ST620_0157:3:1101:9593:1927/2\n-GAATAATTCCACAAGAATAGTACATGCAATTAGAGAAAGGGTTTTAATTGAAGCCTAATAAACACAGAAACAAACCAAAGCATGCAATTGAACAT\n->ERR215189.15 HWI-ST620_0157:3:1101:9720:1969/1\n-AATTTGCCTTGGAAATAACGTGAAGAAGAAAATGCACTTTCAAAGCTAGAAAACGCAAAACAGCAAGATACGCCTTCGTCAGACGTATACGTCTC\n->ERR215189.15 HWI-ST620_0157:3:1101:9720:1969/2\n-GT'..b'CGAAGCTTTCTTGGCCTTGCAGGTTTCTACCGTCGGTTTGTTCGTGATTTTAGCTCCATTGCAGCGCCTCTACATGAGCTTACAAAGAAG\n->ERR215189.74986 HWI-ST620_0157:3:1103:4178:38055/1\n-CAACGTTGGTAGCAACAGGCCGCTACCAGGAGGACCGGCTGAGATGTGGTGTCCAAGGGCACAGGTTTTTGCTCCACTGTCGATCTTTGCATGAA\n->ERR215189.74986 HWI-ST620_0157:3:1103:4178:38055/2\n-CCCTTTTCCTAGAACTTGTGTGCTGCCGAATCTTGACAACACTATCTGTAGAAAGTTTGTTTTCATGCAAAGATCGACAGTGGAGCAAAAACCTG\n->ERR215189.74987 HWI-ST620_0157:3:1103:4374:38184/1\n-GCCAGGCTTTGTTGATCCATATGATCTGTACGATATGGAAGAAGCGGACGAGGATGAAATAGAGGAGCTGAAGAAATATGAGTTCGCTTTGCTGC\n->ERR215189.74987 HWI-ST620_0157:3:1103:4374:38184/2\n-TTCAGCATACTTGCGACAGCACGGAATGCAGCAAAACGAGGGTCGTCGCAGAGATAGTCCTCCAATGCACGATGCCTACCCTCGAGTCCAGGGTG\n->ERR215189.74989 HWI-ST620_0157:3:1103:7120:38094/1\n-ATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTTAACACCGGCGGTCTGTTCAGGGTTCCAAACTCATAGTGGCAACTAAACACGAGGGTTGCGC\n->ERR215189.74989 HWI-ST620_0157:3:1103:7120:38094/2\n-GAGGGGTGCCCTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGCGCAACC\n->ERR215189.74990 HWI-ST620_0157:3:1103:7067:38203/1\n-AAAGATCGTCGTACGATGTCCGATAATTTTATACGCGTAGCGGCGTAGGCCGTGTTCACGGAACGTTCCGTCACATCCCCCGTATCAACCTGAGC\n->ERR215189.74990 HWI-ST620_0157:3:1103:7067:38203/2\n-AGCGGCCGCGGGCACGGACAATCCGGGACAGCAGGGCCTCGCCGGCATTATTACCCCCGCCGTGCCGCCGCTTAATTGCCACCGTGGAGCCGCGG\n->ERR215189.74991 HWI-ST620_0157:3:1103:7453:38152/1\n-GGAGAAAGAGAATAATTGTTGGCACAAGTCGATAAGGTCAGATAGTCCTTACGTTGTCTAACGTATGGTGCAGGATGTCATGACTAGTCCAACTT\n->ERR215189.74991 HWI-ST620_0157:3:1103:7453:38152/2\n-GTTGTTCCGACAGTGGCGGTCGTGAACATCCATTACTAGTCTTTAACGGCCTATTCTAAAATGCCTTTTCAGTCTTAATTCCCAACCTTTGGAGG\n->ERR215189.74992 HWI-ST620_0157:3:1103:7467:38189/1\n-GCTGGTTAAGCAGAAGCTTTGCCGTTTTGCTTAATATTGCAAGGAGGCCATTAGCATATAAATAAATAAGCTTTTAGCAGCAGGTTTCATCCGTG\n->ERR215189.74992 HWI-ST620_0157:3:1103:7467:38189/2\n-TTTTTTACAAGGACTGGATTTGCTAACCAGTCGGGGTGCTTACGTTCACGGATGAAACCTGCTGCTAAAAGCTTATTTATTTATATGCTAATGGC\n->ERR215189.74993 HWI-ST620_0157:3:1103:7344:38214/1\n-GGGAGAGCAGAGCTGGGCTGCTGCCACACAGCTGTTTGCTGCTGATGGCAAAAGCGGTGTCACCGTGCCACGTGCCGGCGCAGGTGTGCGACGTG\n->ERR215189.74993 HWI-ST620_0157:3:1103:7344:38214/2\n-CCTTTCCCGGATATGATATTTAGTAGAGTGAGTTGACAGAGCCAGGAAGAGCTAAGAGAAAAAGCACAGTTAGGGCGATCTAGTTTCTTTTTCTT\n->ERR215189.74994 HWI-ST620_0157:3:1103:8323:38070/1\n-CTTTGGTTTTCAGCCCATCTCTCCCCATCACTCTACAATGCTTCTGCTTTAGCGTGTCTTTCATTGAACCACGCAACAAACCTGTAGAAGGTGAA\n->ERR215189.74994 HWI-ST620_0157:3:1103:8323:38070/2\n-GGTGTGAAGGATAATTTTGAACTGTTTCAGGTTCCTGCTCGTCAGCTTGAGGACTATTACTTTCAGCACACGTTGGAGCAGGTCAGGTCCACAAC\n->ERR215189.74996 HWI-ST620_0157:3:1103:9716:38206/1\n-TTGTTCAGCCACACCATAAGCCACCATGATAAGCTTGTTTTTCACGGGAGTAACAACCTCACAAGGAACCCTCCCAGTAATGTTGTCCACGTGGT\n->ERR215189.74996 HWI-ST620_0157:3:1103:9716:38206/2\n-TGCAAGAACACGTAGCTTTGACAGAGGCAAGAATGGAGGAAGCAATCGACCGGCGTGTGGCTCTAGCTCTTAGCAAACAAGCCATCAGGGGCTAA\n->ERR215189.74997 HWI-ST620_0157:3:1103:11145:38006/1\n-TGGCGAGGAGGCGCTCGCGCGTCTGGCCGACATGGGCCGGCTAGGCGTCCCCGTCGACAGCTACAGCTACGCGCACGGGCTTAAGGCCTGCATTG\n->ERR215189.74997 HWI-ST620_0157:3:1103:11145:38006/2\n-CAGGGCGCTCATTCTTGGCGTAGCATCCAATCATGGCACTCCATGACACAACATTCCTCTCGGGCATCCAAGCAAACACACGCTCTGCATAGGTG\n->ERR215189.74998 HWI-ST620_0157:3:1103:11193:38148/1\n-GTGTTCCAGGCGGCGTAAGTTGTGGAACAATTCCGCAACTCTTTAGATGATTGCTAAACTCGTGGCTCAAATACTCGCCTCCACGATCAGATCGT\n->ERR215189.74998 HWI-ST620_0157:3:1103:11193:38148/2\n-GTCTGAAACCTTTGAAAAGTTCAAGGAATTTCAGAATGAAGTTGAAAATCAGCGTGGCAAGAAAATTAAGGCCTTACGATCTGATCGTGGAGGCG\n->ERR215189.74999 HWI-ST620_0157:3:1103:11027:38205/1\n-CTTATCCGACAAAGCAAACATGCGCCTAGCGAACTGGGCTGGCAAGCTCCTCACGCCCGCAGGAAGGAGAACCCTAGTCCGGGCAGTCCTATCCT\n->ERR215189.74999 HWI-ST620_0157:3:1103:11027:38205/2\n-AGAAGCGAATAGGTTCTTGTCTTTTTCAGTGCACGGAGTTGGCATTTCGACCCAAGGTTTGCGTGGCTCCTTCCATTCATTCCAAAGCCAGCGTA\n->ERR215189.75000 HWI-ST620_0157:3:1103:11413:38069/1\n-CCACTCCTCCAAGCTATATGTGTGGGGAGAGAAGGAAAGCTCCACACACGCGCACTCGCTCACCACGCCACGCCTTGCCTCGCCGGGCCGGGCGG\n->ERR215189.75000 HWI-ST620_0157:3:1103:11413:38069/2\n-GGCAAAAACCCTAGCTTGATTAGATCATCTTTTCGGTAGACGCCAATAGGTCGTATATCTAGAAGAACCCATGATCTCACGCCACGATCGTGATC\n'

diff -r 2e811f988e1d -r ff658cf87f16 test_data/single_output.png

Binary file test_data/single_output.png has changed