| Previous changeset 13:c62cf8c1b07c (2019-06-11) Next changeset 15:785b6253af1f (2019-06-11) |
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Commit message:
planemo upload commit 87db86a34f2d92eb2c9756bf9ee53ae2970554d5 |
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modified:
rpviz.xml |
| b |
| diff -r c62cf8c1b07c -r ff6c33d3a9d5 rpviz.xml --- a/rpviz.xml Tue Jun 11 05:02:24 2019 -0400 +++ b/rpviz.xml Tue Jun 11 09:38:55 2019 -0400 |
| [ |
| @@ -7,15 +7,12 @@ <requirement type="package">rdkit</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ - if [ ! -d rpviz ] - then - git clone https://github.com/pablocarb/rpviz.git $__tool_directory__/rpviz > /dev/null - else - cd $__tool_directory__/rpviz; git pull; cd .. - fi - cd $__tool_directory__ - python $__tool_directory__/toolVisualizer.py $input1 $output1 - ]]></command> + git clone https://github.com/pablocarb/rpviz.git $__tool_directory__/rpviz; + cd $__tool_directory__/rpviz; git pull; cd ..; + cd $__tool_directory__; + echo `which python` > $__tool_directory__/info.log; + PYTHONPATH="$__tool_directory__" python $__tool_directory__/toolVisualizer.py $input1 $output1 + ]]></command> <inputs> <param type="data" name="input1" format="xml" /> </inputs> |