| Previous changeset 4:531ff1d417b6 (2018-09-07) Next changeset 6:5c265c4835c0 (2019-12-04) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/art commit 1626a4a0313ab6363a214932e6dcd6f54f6ad6cf |
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modified:
art_solid.xml macros.xml |
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| diff -r 531ff1d417b6 -r ff8599e52a55 art_solid.xml --- a/art_solid.xml Fri Sep 07 10:57:50 2018 -0400 +++ b/art_solid.xml Thu Apr 11 03:22:40 2019 -0400 |
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| @@ -63,7 +63,7 @@ <param name="choice" type="select" label="Type of data to generate"> <option value="single_end">Single-End</option> <option value="paired_end">Paired-End</option> - <option value="paired_end">Mate Pair</option> + <option value="mate_pair">Mate Pair</option> </param> <when value="single_end"> <param name="LEN_READ" type="integer" label="Length of F3/R3 reads" value="100" /> |
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| diff -r 531ff1d417b6 -r ff8599e52a55 macros.xml --- a/macros.xml Fri Sep 07 10:57:50 2018 -0400 +++ b/macros.xml Thu Apr 11 03:22:40 2019 -0400 |
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| @@ -19,18 +19,15 @@ </stdio> </xml> <xml name="aln"> - <param type="boolean" label="output ALN alignment file (-a)" name="aln" - truevalue="-a" falsevalue="" /> + <param name="aln" argument="-a" type="boolean" truevalue="-a" falsevalue="" label="Output ALN alignment file" /> </xml> <xml name="sam"> - <param type="boolean" label="output SAM alignment file (-s)" name="sam" - truevalue="-s" falsevalue="" /> + <param name="sam" argument="-s" type="boolean" truevalue="-s" falsevalue="" label="Output SAM alignment file" /> </xml> <xml name="rndSeed"> - <param label="specify a fixed, random seed for the simulation" - help="Use -1 to request a random seed (-r)" name="rndSeed" - type="integer" value="-1" optional="true" /> + <param name="rndSeed" argument="-r" type="integer" value="-1" optional="true" label="Fixed random seed for the simulation" + help="Use -1 to request a random seed" /> </xml> <xml name="citation"> @@ -41,30 +38,26 @@ <xml name="amplicon"> <conditional name="amplicon"> - <param name="use_amplicon" type="boolean" label="Run Amplicon Sequencing Simulation" truevalue="amplicon_true" falsevalue="amplicon_false" /> + <param name="use_amplicon" type="boolean" truevalue="amplicon_true" falsevalue="amplicon_false" label="Run Amplicon Sequencing Simulation" /> <when value="amplicon_true"> - <param label="number of reads per amplicon (for 5'end amplicon sequencing)" name="reads_per_amplicon" type="integer" value="0"/> + <param name="reads_per_amplicon" type="integer" value="0" label="Number of reads per amplicon (for 5'end amplicon sequencing)" /> </when> - <when value="amplicon_false"> - </when> + <when value="amplicon_false" /> </conditional> </xml> <xml name="amplicon_pair"> <conditional name="amplicon"> - <param name="use_amplicon" type="boolean" label="Run Amplicon Sequencing Simulation" truevalue="amplicon_true" falsevalue="amplicon_false" /> + <param name="use_amplicon" type="boolean" truevalue="amplicon_true" falsevalue="amplicon_false" label="Run Amplicon Sequencing Simulation" /> <when value="amplicon_true"> - <param label="number of read pairs per amplicon (for two-end amplicon sequencing)" name="read_pairs_per_amplicon" type="integer" value="0"/> + <param name="read_pairs_per_amplicon" type="integer" value="0" label="Number of read pairs per amplicon (for two-end amplicon sequencing)" /> </when> - <when value="amplicon_false"> - </when> + <when value="amplicon_false" /> </conditional> </xml> <xml name="frag_len_sd"> - <param label="the average DNA fragment size" - name="fragment_size" type="integer" value="200" /> - <param label="the standard deviation of the DNA fragment size" - name="fragment_sd" type="integer" value="0"/> + <param name="fragment_size" type="integer" value="200" label="Average DNA fragment size" /> + <param name="fragment_sd" type="integer" value="0" label="Standard deviation of the DNA fragment size" /> </xml> </macros> |