Repository 'unicycler'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/unicycler

Changeset 5:23300b42ca18 (2018-09-19)
Previous changeset 4:2db911a4efc5 (2018-09-06) Next changeset 6:0a3a602cd1e3 (2019-02-09)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/unicycler commit fbcae3c133b8f34507da0d931212435f7772999f
modified:
unicycler.xml
b
diff -r 2db911a4efc5 -r 23300b42ca18 unicycler.xml
--- a/unicycler.xml Thu Sep 06 10:59:26 2018 -0400
+++ b/unicycler.xml Wed Sep 19 17:07:02 2018 -0400
b
@@ -177,7 +177,7 @@
         </section>
     </inputs>
     <outputs>
-        <data name="assembly_graph" format="txt" from_work_dir="assembly.gfa" label="${tool.name} on ${on_string}: Final Assembly Graph" />
+        <data name="assembly_graph" format="tabular" from_work_dir="assembly.gfa" label="${tool.name} on ${on_string}: Final Assembly Graph" />
         <data name="assembly" format="fasta" from_work_dir="assembly.fasta" label="${tool.name} on ${on_string}: Final Assembly"/>
     </outputs>
     <tests>
@@ -213,7 +213,7 @@
             <section name="lr_align">
                 <param name="scores" value="3,-6,-5,-2"/>
             </section>
-            <output name="assembly_graph" ftype="txt">
+            <output name="assembly_graph" ftype="tabular">
                 <assert_contents>
                     <has_text text="TACGGGGAAGGACGTC"/>
                 </assert_contents>
@@ -268,7 +268,7 @@
             <section name="lr_align">
                 <param name="scores" value="3,-6,-5,-2"/>
             </section>
-            <output name="assembly_graph" ftype="txt">
+            <output name="assembly_graph" ftype="tabular">
                 <assert_contents>
                     <has_text text="TACGGGGAAGGACGTC" />
                 </assert_contents>
@@ -315,7 +315,7 @@
             <section name="lr_align">
                 <param name="scores" value="3,-6,-5,-2"/>
             </section>
-            <output name="assembly_graph" ftype="txt">
+            <output name="assembly_graph" ftype="tabular">
                 <assert_contents>
                     <has_text text="TACGGGGAAGGACGTC" />
                 </assert_contents>
@@ -335,7 +335,7 @@
                 <param name="kmers" value="21,23"/>
             </section>
             <param name="long" value="only_long.fasta" ftype="fasta" />
-            <output name="assembly_graph" ftype="txt">
+            <output name="assembly_graph" ftype="tabular">
                 <assert_contents>
                     <has_text text="S" />
                 </assert_contents>