| Previous changeset 2:d8a3d31554d7 (2018-05-08) Next changeset 4:b29d37ca9e41 (2020-01-30) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_renamer commit 3953b65f6b1c0336e9cadbe0792a5d3b14b5643a |
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modified:
fastx_renamer.xml macros.xml |
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| diff -r d8a3d31554d7 -r 3599f5451ee2 fastx_renamer.xml --- a/fastx_renamer.xml Tue May 08 13:28:10 2018 -0400 +++ b/fastx_renamer.xml Wed Aug 22 11:05:29 2018 -0400 |
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| @@ -10,6 +10,7 @@ -o '$output' -v @FQQUAL@ +@GZIP@ ]]></command> <inputs> |
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| diff -r d8a3d31554d7 -r 3599f5451ee2 macros.xml --- a/macros.xml Tue May 08 13:28:10 2018 -0400 +++ b/macros.xml Wed Aug 22 11:05:29 2018 -0400 |
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| @@ -2,7 +2,7 @@ <macros> <token name="@CATS@"> #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): - zcat -f '$input' | + gunzip -c -f '$input' | #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'): bzcat -f '$input' | #else: @@ -18,6 +18,13 @@ #end if ]]> </token> + <token name="@GZIP@"> + <![CDATA[ + #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): + -z + #end if + ]]> + </token> <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">fastx_toolkit</requirement> |