Repository 'intersect'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/intersect

Changeset 6:69c10b56f46d (2022-06-13)
Previous changeset 5:33b3f3688db4 (2017-06-22)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/intersect commit d7b1a60c0aecc46b7f625c3e32f882562b512fd9
modified:
operation_filter.py
removed:
utils/__init__.pyc
utils/gff_util.pyc
utils/odict.pyc
b
diff -r 33b3f3688db4 -r 69c10b56f46d operation_filter.py
--- a/operation_filter.py Thu Jun 22 18:52:23 2017 -0400
+++ b/operation_filter.py Mon Jun 13 16:23:33 2022 +0000
[
@@ -45,22 +45,7 @@
             error_map[name] = "A dataset of the appropriate type is required"
 
 
-# Commented out by INS, 5/30/2007.  What is the PURPOSE of this?
-def exec_after_process(app, inp_data, out_data, param_dict, tool=None, stdout=None, stderr=None):
-    """Verify the output data after each run"""
-    for data in out_data.values():
-        try:
-            if stderr and len( stderr ) > 0:
-                raise Exception( stderr )
-        except Exception:
-            data.blurb = JOB_ERROR
-            data.state = JOB_ERROR
-
-
 def exec_after_merge(app, inp_data, out_data, param_dict, tool=None, stdout=None, stderr=None):
-    exec_after_process(
-        app, inp_data, out_data, param_dict, tool=tool, stdout=stdout, stderr=stderr)
-
     # strip strand column if clusters were merged
     for data in out_data.values():
         if param_dict['returntype'] is True:
@@ -72,9 +57,6 @@
 
 
 def exec_after_cluster(app, inp_data, out_data, param_dict, tool=None, stdout=None, stderr=None):
-    exec_after_process(
-        app, inp_data, out_data, param_dict, tool=tool, stdout=stdout, stderr=stderr)
-
     # strip strand column if clusters were merged
     if param_dict["returntype"] == '1':
         for data in out_data.values():
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diff -r 33b3f3688db4 -r 69c10b56f46d utils/__init__.pyc
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Binary file utils/__init__.pyc has changed
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diff -r 33b3f3688db4 -r 69c10b56f46d utils/gff_util.pyc
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Binary file utils/gff_util.pyc has changed
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diff -r 33b3f3688db4 -r 69c10b56f46d utils/odict.pyc
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Binary file utils/odict.pyc has changed